RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CXorf67Q86X51 503 aaPredicted RBP11.26□□□□□ -0.61
USP53-209ENST00000514665 BAGE3Q86Y29 109 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 BAGE2Q86Y30 109 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 C1orf87Q8N0U7 546 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 OR4F5Q8NH21 305 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 OR4F4Q96R69 305 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 RIMS4Q9H426 269 aaPredicted RBP11.26□□□□□ -0.61
USP53-209ENST00000514665 C12orf10Q9HB07 376 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 MTCH2Q9Y6C9 303 aa11.26□□□□□ -0.61
USP53-209ENST00000514665 SCN10AQ9Y5Y9 1956 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 LRP5LA4QPB2 252 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 SCGB2A1O75556 95 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 CRYBA2P53672 197 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 SSTP61278 116 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 ACER2Q5QJU3 275 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 CLEC9AQ6UXN8 241 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 IL34Q6ZMJ4 242 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 GCNT2Q8N0V5 402 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 RBMXL3Q8N7X1 1067 aaKnown RBP11.25□□□□□ -0.61
USP53-209ENST00000514665 NANPQ8TBE9 248 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 BORCS7Q96B45 105 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 LINC00052Q96N35 136 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 C12orf57Q99622 126 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 PSENENQ9NZ42 101 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 MMP24Q9Y5R2 645 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 CACNA1HO95180 2353 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 ABCA1O95477 2261 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 C4orf47A7E2U8 309 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 LEUTXA8MZ59 168 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 CTDSPLO15194 276 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 IGF2P01344 180 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 RPS2P15880 293 aaKnown RBP11.25□□□□□ -0.61
USP53-209ENST00000514665 GABRA4P48169 554 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 PJVKQ0ZLH3 352 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 RAB35Q15286 201 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 RPL7L1Q6DKI1 246 aaKnown RBP11.25□□□□□ -0.61
USP53-209ENST00000514665 RFESDQ8TAC1 157 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 APOBEC3DQ96AK3 386 aaPredicted RBP11.25□□□□□ -0.61
USP53-209ENST00000514665 CABLES2Q9BTV7 478 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 CLEC18AA5D8T8 446 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 HMSDA8MTL9 139 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 MASP2O00187 686 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 GPR31O00270 319 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 AQP7O14520 342 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 CST4P01036 141 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 PDGFBP01127 241 aaPredicted RBP11.25□□□□□ -0.61
USP53-209ENST00000514665 GPR12P47775 334 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 MPPED2Q15777 294 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 GUK1Q16774 197 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 GGNBP1Q5YKI7 109 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 DEFB123Q8N688 67 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 CLEC18CQ8NCF0 446 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 SMIM7Q9BQ49 75 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 MFRPQ9BY79 579 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 RAB18Q9NP72 206 aa11.25□□□□□ -0.61
USP53-209ENST00000514665 SLC22A20A6NK97 555 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 CRYAAP02489 173 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 ANKRD34CP0C6C1 535 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 SFTA3P0C7M3 94 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 ERGP11308 486 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 CPN1P15169 458 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 PNLIPP16233 465 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 CATSPERDQ86XM0 798 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 OR10D3Q8NH80 312 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 WDR13Q9H1Z4 485 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 CA10Q9NS85 328 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 ERRFI1Q9UJM3 462 aaPredicted RBP11.24□□□□□ -0.61
USP53-209ENST00000514665 PILRAQ9UKJ1 303 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 PCDHGA9Q9Y5G4 932 aaKnown RBP11.24□□□□□ -0.61
USP53-209ENST00000514665 FIGNL2A6NMB9 653 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 C5orf67F2Z3F1 127 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 TLE1Q04724 770 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 ZNF816Q0VGE8 651 aaPredicted RBP11.24□□□□□ -0.61
USP53-209ENST00000514665 OR1J1Q8NGS3 322 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 FBXL17Q9UF56 701 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 KCNE5Q9UJ90 142 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 LIPT2A6NK58 231 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 CCL4P13236 92 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 HNF1AP20823 631 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 EPHA8P29322 1005 aaPredicted RBP11.24□□□□□ -0.61
USP53-209ENST00000514665 ISXQ2M1V0 245 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 DHRS13Q6UX07 377 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 C9orf40Q8IXQ3 194 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 ZNF439Q8NDP4 499 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 OR4D10Q8NGI6 311 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 ASB10Q8WXI3 467 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 PCED1AQ9H1Q7 454 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 ZNF831Q5JPB2 1677 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 C7orf66A4D0T2 115 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 OR5AC1P0C628 307 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 RAC1P63000 192 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 ZXDAP98168 799 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 ZADH2Q8N4Q0 377 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 OR5M9Q8NGP3 310 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 SLC39A7Q92504 469 aa11.24□□□□□ -0.61
USP53-209ENST00000514665 MS4A7Q9GZW8 240 aaPredicted RBP11.24□□□□□ -0.61
USP53-209ENST00000514665 LIN7CQ9NUP9 197 aaKnown RBP11.24□□□□□ -0.61
USP53-209ENST00000514665 FAM24AA6NFZ4 105 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 SHISA7A6NL88 538 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 IGHV4-34P06331 123 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms