RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.77□□□□□ -0.53
HOXC9-202ENST00000504557 CENPVL3A0A0U1RRI6 287 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 LOC100130705A0A1B0GUX0 176 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 PQLC2LA1A4F0 135 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 RFPL4AA6NLU0 287 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 ANKRD65E5RJM6 399 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 RFPL4AL1F8VTS6 287 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 HTR1AP08908 422 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 ACAA1P09110 424 aaPredicted RBP11.76□□□□□ -0.53
HOXC9-202ENST00000504557 DBTP11182 482 aaKnown RBP11.76□□□□□ -0.53
HOXC9-202ENST00000504557 MMP9P14780 707 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 PRTN3P24158 256 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 TGM4P49221 684 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 LPCAT4Q643R3 524 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 TMEM42Q69YG0 159 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 ACP7Q6ZNF0 438 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 ZNF788Q6ZQV5 615 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 CALHM1Q8IU99 346 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 ACBD7Q8N6N7 88 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 ZNF555Q8NEP9 628 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 FAM118AQ9NWS6 357 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 SLC7A11Q9UPY5 501 aa11.76□□□□□ -0.53
HOXC9-202ENST00000504557 SIGLEC5O15389 551 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 SLC16A6O15403 523 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 HOXA3O43365 443 aaPredicted RBP11.75□□□□□ -0.53
HOXC9-202ENST00000504557 UBCP0CG48 685 aaKnown RBP11.75□□□□□ -0.53
HOXC9-202ENST00000504557 ZNF20P17024 532 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 CCL1P22362 96 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 NANOS3P60323 173 aaKnown RBP11.75□□□□□ -0.53
HOXC9-202ENST00000504557 KLRD1Q13241 179 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 PDCD1Q15116 288 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 SLC9A3R2Q15599 337 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 UBE2V2Q15819 145 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 ZSCAN26Q16670 478 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 SMIM21Q3B7S5 101 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 CDONQ4KMG0 1287 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 ATPAF1Q5TC12 328 aaPredicted RBP11.75□□□□□ -0.53
HOXC9-202ENST00000504557 FAM185AQ8N0U4 392 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 C3orf56Q8N813 242 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 POC1AQ8NBT0 407 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 OR2G2Q8NGZ5 317 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 CYGBQ8WWM9 190 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 GATAD2BQ8WXI9 593 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 SLAMF9Q96A28 289 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 SLC25A28Q96A46 364 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 DCTN5Q9BTE1 182 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 ALG8Q9BVK2 526 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 SMPD3Q9NY59 655 aaPredicted RBP11.75□□□□□ -0.53
HOXC9-202ENST00000504557 FRRS1LQ9P0K9 344 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 MYRFQ9Y2G1 1151 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 POLDIP2Q9Y2S7 368 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 PCDHGB1Q9Y5G3 927 aa11.75□□□□□ -0.53
HOXC9-202ENST00000504557 DSCAML1Q8TD84 2053 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 IGHV1-69DA0A0B4J2H0 117 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 E9PQ18 207 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 MPZL2O60487 215 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 GATBO75879 557 aaKnown RBP11.74□□□□□ -0.53
HOXC9-202ENST00000504557 CLIC3O95833 236 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 SERPINA3P01011 423 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 IGHV1-69P01742 117 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 OCM2P0CE71 109 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 OCMP0CE72 109 aaPredicted RBP11.74□□□□□ -0.53
HOXC9-202ENST00000504557 PGA5P0DJD9 388 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 GABRB1P18505 474 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 POU3F4P49335 361 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 SNU13P55769 128 aaKnown RBP11.74□□□□□ -0.53
HOXC9-202ENST00000504557 ISL1P61371 349 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 RCN1Q15293 331 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 SMN1Q16637 294 aaKnown RBP11.74□□□□□ -0.53
HOXC9-202ENST00000504557 SLC25A30Q5SVS4 291 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 C9orf139Q6ZV77 190 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 KRT74Q7RTS7 529 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 CMTM4Q8IZR5 234 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 CD177Q8N6Q3 437 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 ZNF676Q8N7Q3 588 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 OR13C3Q8NGS6 347 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 OR10AC1Q8NH08 325 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 ITFG2Q969R8 447 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 FGGYQ96C11 551 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 PELI1Q96FA3 418 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 BORCS8Q96FH0 119 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 Q96MT0 163 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 DNTTIP1Q9H147 329 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 ISG20L2Q9H9L3 353 aaKnown RBP11.74□□□□□ -0.53
HOXC9-202ENST00000504557 EXOGQ9Y2C4 368 aaKnown RBP11.74□□□□□ -0.53
HOXC9-202ENST00000504557 MAB21L2Q9Y586 359 aa11.74□□□□□ -0.53
HOXC9-202ENST00000504557 IGKV1-27A0A075B6S5 117 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 A0A0U1RQK1 487 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 MEX3AA1L020 520 aaKnown RBP11.73□□□□□ -0.53
HOXC9-202ENST00000504557 TMEM89A2RUT3 159 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 DHRS7CA6NNS2 312 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 J3QRE1 110 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 SLC1A7O00341 560 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 FADS2O95864 444 aaKnown RBP11.73□□□□□ -0.53
HOXC9-202ENST00000504557 CALCBP10092 127 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 PRDX2P32119 198 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 ACTA2P62736 377 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 ACTG2P63267 376 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 TMEM244Q5VVB8 128 aa11.73□□□□□ -0.53
HOXC9-202ENST00000504557 SLC25A26Q70HW3 274 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms