RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 LAMTOR5O43504 91 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 NXPH3O95157 252 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 IL2RAP01589 272 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 ZNF616Q08AN1 781 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 KISS1Q15726 138 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 TMEM128Q5BJH2 165 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 CRIP3Q6Q6R5 217 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 MAML2Q8IZL2 1156 aaPredicted RBP14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 OR2Y1Q8NGV0 311 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 C14orf79Q96F83 325 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 RTBDNQ9BSG5 229 aaPredicted RBP14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 MOB1AQ9H8S9 216 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 PISDQ9UG56 409 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 NTN3O00634 580 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 MELTFP08582 738 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 SNRNP70P08621 437 aaKnown RBP14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 HIST1H1DP16402 221 aaKnown RBP14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 DSCR4P56555 118 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 LPCAT3Q6P1A2 487 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 DOK3Q7L591 496 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 ZIC4Q8N9L1 334 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 NANPQ8TBE9 248 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 ALKBH3Q96Q83 286 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 CLCC1Q96S66 551 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 ULBP2Q9BZM5 246 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 NELFAQ9H3P2 528 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 PLA2G2EQ9NZK7 142 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 NXT1Q9UKK6 140 aaKnown RBP14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 TECTAO75443 2155 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 RFC3P40938 356 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 FOLR3P41439 243 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 F2RL1P55085 397 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 Q0VFX4 171 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 IAH1Q2TAA2 248 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 KRBOX4Q5JUW0 171 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 GUCD1Q96NT3 240 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 CDC6Q99741 560 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 TAF9BQ9HBM6 251 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 PIGLQ9Y2B2 252 aa14.44□□□□□ -0.1
CCDC88B-210ENST00000494566 DHHO43323 396 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 FAM157CP0CG43 387 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 FCGR2AP12318 317 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 ZFP36L1Q07352 338 aaKnown RBP14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 EXT1Q16394 746 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 RAB11FIP2Q7L804 512 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 TMEM105Q8N8V8 129 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 ZDHHC22Q8N966 263 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 RPS10P5Q9NQ39 176 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 EDARQ9UNE0 448 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 TEX13DA0A0J9YY54 714 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 SPRY1O43609 319 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 TRAPPC6AO75865 159 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 IGHV3-9P01782 118 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 TDGF1P13385 188 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 WDR5BQ86VZ2 330 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 TMEM123Q8N131 208 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 OR14L1PQ8NHC6 308 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 PCDHGA1Q9Y5H4 931 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 DNAJC13O75165 2243 aa14.43□□□□□ -0.1
CCDC88B-210ENST00000494566 KIAA1549Q9HCM3 1950 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 ARPC4-TTLL3A0A0A6YYG9 625 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 GRB2P62993 217 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 PHLDA2Q53GA4 152 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 Q6ZRG5 221 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 GJC3Q8NFK1 279 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 KCNG3Q8TAE7 436 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 GPR173Q9NS66 373 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 GPR132Q9UNW8 380 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 MEX3AA1L020 520 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 M0R036 132 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 M0R135 149 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 MLF1P58340 268 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 HGFACQ04756 655 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 CHRFAM7AQ494W8 412 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 UBALD2Q8IYN6 164 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 ZNF799Q96GE5 643 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 NRIP2Q9BQI9 281 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 SULT4A1Q9BR01 284 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 SLC2A8Q9NY64 477 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 ESPL1Q14674 2120 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 SFT2D2O95562 160 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 ZNF806P0C7X5 589 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 B4GALT1P15291 398 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 CPT2P23786 658 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 PTGER4P35408 488 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 PTGFRP43088 359 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 KCNMB1Q16558 191 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 WIPI1Q5MNZ9 446 aaPredicted RBP14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 AADACL3Q5VUY0 350 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 AKR7LQ8NHP1 331 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 TMEM54Q969K7 222 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 MRPL24Q96A35 216 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 ZNF2Q9BSG1 426 aaPredicted RBP14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 CRLF2Q9HC73 371 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 LPAR3Q9UBY5 353 aa14.42□□□□□ -0.1
CCDC88B-210ENST00000494566 SPENQ96T58 3664 aaKnown RBP14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 DSPP15924 2871 aaKnown RBP14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 A0A1W2PPE3 182 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 DHRS7CA6NNS2 312 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 RNASEK-C17orf49H0YIS7 233 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms