RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZNF385CQ66K41 422 aaPredicted RBP9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SSX7Q7RTT5 188 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 AAED1Q7RTV5 226 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SYS1Q8N2H4 156 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ARL6IP6Q8N6S5 226 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MALSU1Q96EH3 234 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SAT2Q96F10 170 aaPredicted RBP9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PACRGQ96M98 296 aaPredicted RBP9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 LOC107986453A0A1B0GWG9 222 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 NANOS3P60323 173 aaKnown RBP9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ZNF528Q3MIS6 628 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PRR18Q8N4B5 295 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CHST11Q9NPF2 352 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SIRT7Q9NRC8 400 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MRPS18AQ9NVS2 196 aaKnown RBP9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PCDHGA1Q9Y5H4 931 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 NPTNQ9Y639 398 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR2M5A3KFT3 312 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 IGHA1P01876 353 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 KLK2P20151 261 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MPGP29372 298 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 GPX4P36969 197 aaPredicted RBP9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ECH1Q13011 328 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 GAMTQ14353 236 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 C2orf76Q3KRA6 126 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 GCNT2Q8N0V5 402 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 DTWD2Q8NBA8 298 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ZNF764Q96H86 408 aaPredicted RBP9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 NAA11Q9BSU3 229 aaPredicted RBP9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 URM1Q9BTM9 101 aaKnown RBP9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 C1orf198Q9H425 327 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 LNP1A1A4G5 178 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 FAM221AA4D161 298 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR5H15A6NDH6 313 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR5H1A6NKK0 313 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ZNF724A8MTY0 619 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SYNGR4O95473 234 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PNLIPP16233 465 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RPL12P30050 165 aaKnown RBP9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RPP30P78346 268 aaKnown RBP9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PPP1R1AQ13522 171 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TMEM41BQ5BJD5 291 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 WDR38Q5JTN6 314 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SPIN3Q5JUX0 258 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 WDR74Q6RFH5 385 aaPredicted RBP9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 LFNGQ8NES3 379 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR4S1Q8NGB4 309 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SCGB1C1Q8TD33 95 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CMBLQ96DG6 245 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 HES7Q9BYE0 225 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ALX4Q9H161 411 aaPredicted RBP9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR52A1Q9UKL2 312 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 H3BMH7 237 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MFNGO00587 321 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 IFNA5P01569 189 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OMGP23515 440 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 HTR5AP47898 357 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CX3CR1P49238 355 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 H3F3AP84243 136 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 EGR4Q05215 589 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MOGAT2Q3SYC2 334 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 LBHQ53QV2 105 aaPredicted RBP9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 HES3Q5TGS1 186 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OGFOD3Q6PK18 319 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TMEM105Q8N8V8 129 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SEMA6DQ8NFY4 1073 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 C11orf40Q8WZ69 217 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PIGCQ92535 297 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SLAMF6Q96DU3 332 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 UTP23Q9BRU9 249 aaKnown RBP9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 GPR61Q9BZJ8 451 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MUC3AQ02505 3323 aa9.53□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RAMP1O60894 148 aa9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 DBHP09172 617 aa9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 P2RY4P51582 365 aa9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RPL23AP62750 156 aaKnown RBP9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RPL7L1Q6DKI1 246 aaKnown RBP9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR5AP2Q8NGF4 316 aa9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR51A2Q8NGJ7 313 aa9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR2AE1Q8NHA4 323 aa9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MARCH1Q8TCQ1 289 aa9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PIK3IP1Q96FE7 263 aa9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CABLES2Q9BTV7 478 aa9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TXNIPQ9H3M7 391 aa9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.52□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PLXNB3Q9ULL4 1909 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 WNK2Q9Y3S1 2297 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 IGKV1D-42A0A075B6H8 117 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM212A6NML5 194 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PNPP00491 289 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MMP7P09237 267 aaPredicted RBP9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMIGD3P0DMS9 266 aaPredicted RBP9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 S100GP29377 79 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HABP2Q14520 560 aaPredicted RBP9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 DMKNQ6E0U4 476 aaPredicted RBP9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM182Q6ZP80 229 aaPredicted RBP9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC25A28Q96A46 364 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM18Q96B42 140 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MRM2Q9UI43 246 aaKnown RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms