RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 TPD52L2O43399 206 aaKnown RBP9.31□□□□□ -0.92
USP4-214ENST00000491791 RAD51DO75771 328 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 DUS4LO95620 317 aaKnown RBP9.31□□□□□ -0.92
USP4-214ENST00000491791 CST4P01036 141 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 FAM90A15PP0C7V4 464 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 FAM90A13PP0C7W8 464 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 FAM90A14PP0C7W9 464 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 FAM90A24PP0C7X0 464 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 LIPCP11150 499 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 NFYAP23511 347 aaPredicted RBP9.31□□□□□ -0.92
USP4-214ENST00000491791 CALCRP30988 508 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 HRH1P35367 487 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 TNFSF10P50591 281 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 TAS2R46P59540 309 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 SEC61A1P61619 476 aaKnown RBP9.31□□□□□ -0.92
USP4-214ENST00000491791 SNRPD2P62316 118 aaKnown RBP9.31□□□□□ -0.92
USP4-214ENST00000491791 PLGLB1Q02325 96 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 CLN3Q13286 438 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 GRK1Q15835 563 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 SLC22A6Q4U2R8 563 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 ZNF766Q5HY98 468 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 PABPC1L2AQ5JQF8 200 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 SFRP5Q5T4F7 317 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 CHMP1BQ7LBR1 199 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 LYG2Q86SG7 212 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 TUSC5Q8IXB3 177 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 SAXO1Q8IYX7 474 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 GVQW1Q8N7I0 195 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 CPEB3Q8NE35 698 aaKnown RBP9.31□□□□□ -0.92
USP4-214ENST00000491791 ZNF680Q8NEM1 530 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 OR51T1Q8NGJ9 327 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 OR52B4Q8NGK2 314 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 OR5M8Q8NGP6 311 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 AKR7LQ8NHP1 331 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 APH1AQ96BI3 265 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 S100A13Q99584 98 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 REPIN1Q9BWE0 567 aaKnown RBP9.31□□□□□ -0.92
USP4-214ENST00000491791 BANF2Q9H503 90 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 EDARQ9UNE0 448 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 GPR132Q9UNW8 380 aa9.31□□□□□ -0.92
USP4-214ENST00000491791 HECTD1Q9ULT8 2610 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 IGKV1-27A0A075B6S5 117 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 A0A1W2PP11 408 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 C9orf170A2RU37 121 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 LINC00862A6NCI5 91 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 RFPL4AA6NLU0 287 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 FIGNL2A6NMB9 653 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 FAM166BA8MTA8 275 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 RFPL4AL1F8VTS6 287 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 EFSO43281 561 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 SLC22A5O76082 557 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 F10P00742 488 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 NRASP01111 189 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 IFNA7P01567 189 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 IFNA6P05013 189 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 SFTPCP11686 197 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 SLC25A4P12235 298 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 RPA2P15927 270 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 PPP3CBP16298 524 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 DTYMKP23919 212 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 FPR2P25090 351 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 ATP1B3P54709 279 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 MTCP1P56278 107 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 GMFBP60983 142 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 ZNF92Q03936 586 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 FGL1Q08830 312 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 MICBQ29980 383 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 C2orf68Q2NKX9 166 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 C4orf46Q504U0 113 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 NHLRC3Q5JS37 347 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 ELP2Q6IA86 826 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 OVCH2Q7RTZ1 564 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 TMEM200AQ86VY9 491 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 FTMTQ8N4E7 242 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 FNDC9Q8TBE3 224 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 APOBEC3DQ96AK3 386 aaPredicted RBP9.3□□□□□ -0.92
USP4-214ENST00000491791 GPR173Q9NS66 373 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 EIF3KQ9UBQ5 218 aaKnown RBP9.3□□□□□ -0.92
USP4-214ENST00000491791 SLC7A11Q9UPY5 501 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 OSGIN2Q9Y236 505 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 AHCTF1Q8WYP5 2266 aa9.3□□□□□ -0.92
USP4-214ENST00000491791 LOC100509620A0A075B734 347 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 TRGV5A0A0B4J1U4 118 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 CEACAM4O75871 244 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 CNOT4O95628 575 aaKnown RBP9.29□□□□□ -0.92
USP4-214ENST00000491791 EDN3P14138 238 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 MPGP29372 298 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 BLVRBP30043 206 aaPredicted RBP9.29□□□□□ -0.92
USP4-214ENST00000491791 AGTR1P30556 359 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 OR3A2P47893 321 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 TSPAN5P62079 268 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 PDZK1IP1Q13113 114 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 SRSF7Q16629 238 aaKnown RBP eCLIP9.29□□□□□ -0.92
USP4-214ENST00000491791 TMEM128Q5BJH2 165 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 CLLU1Q5K131 121 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 OR52W1Q6IF63 320 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 TMEM17Q86X19 198 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 CCDC36Q8IYA8 594 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 CSNK2A3Q8NEV1 391 aa9.29□□□□□ -0.92
USP4-214ENST00000491791 OR2AE1Q8NHA4 323 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms