RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 C20orf202A1L168 122 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 LRIT2A6NDA9 550 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OOEPA6NGQ2 149 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 FBLL1A6NHQ2 334 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 COLCA2A8K830 154 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF99A8MXY4 864 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 DISC1C4P0D8 188 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ANKRD63C9JTQ0 380 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 E7ESA3 106 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 I3L1I5 382 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 M0R233 179 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 GPR31O00270 319 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CXCR6O00574 342 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PRRG1O14668 218 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 EI24O14681 340 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 MSH4O15457 936 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CCL16O15467 120 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 FABP7O15540 132 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 P2RX6O15547 441 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ST8SIA3O43173 380 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF264O43296 627 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SNAI2O43623 268 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 LANCL1O43813 399 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 KIAA0513O60268 411 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 B4GALT2O60909 372 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SCGB2A1O75556 95 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 KBTBD11O94819 623 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 YIF1AO95070 293 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 GABARAPO95166 117 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR6A2O95222 327 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 VAPBO95292 243 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SIX6O95475 246 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CTDNEP1O95476 244 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 LALBAP00709 142 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 MT-ATP6P00846 226 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 JCHAINP01591 159 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 IGHG1P01857 330 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 RPN2P04844 631 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 C8GP07360 202 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 NMBP08949 121 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 HIST1H2AGP0C0S8 130 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR9G9P0C7N8 305 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SMIM10L2AP0DMW4 78 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SMIM10L2BP0DMW5 78 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CALCBP10092 127 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF35P13682 527 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 GABRA1P14867 456 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 KCNE1P15382 129 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF44P15621 663 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 DRD5P21918 477 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PCMT1P22061 227 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CD82P27701 267 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SLC6A1P30531 599 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ARR3P36575 388 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TGFBR1P36897 503 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 AKR1C3P42330 323 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 LGALS7P47929 136 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 RORCP51449 518 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CRYBA4P53673 196 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SLC18A1P54219 525 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 AQP5P55064 265 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 KLF3P57682 345 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 RAP1BP61224 184 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 RRAS2P62070 204 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ARF6P62330 175 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 MRPS10P82664 201 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 HOXC5Q00444 222 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 NAAAQ02083 359 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 IRF8Q02556 426 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PDZK1IP1Q13113 114 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 EIF4EBP2Q13542 120 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PRPSAP1Q14558 356 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF235Q14590 738 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZBTB6Q15916 424 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 GUCA2BQ16661 112 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 GUK1Q16774 197 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 NDUFA9Q16795 377 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM249Q2WGJ8 235 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SMIM21Q3B7S5 101 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 LGALSLQ3ZCW2 172 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PTPN20Q4JDL3 420 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SLC22A6Q4U2R8 563 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SPANXN2Q5MJ10 180 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PHYHD1Q5SRE7 291 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SAMD13Q5VXD3 122 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TRIQKQ629K1 86 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 KDM4DQ6B0I6 523 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CLEC6AQ6EIG7 209 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 HIST2H2AA3Q6FI13 130 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF770Q6IQ21 691 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 DNAJC24Q6P3W2 148 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PODNL1Q6PEZ8 512 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 BTNL3Q6UXE8 466 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CD300LGQ6UXG3 332 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 UNQ9370/PRO34162Q6UXP9 181 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CASP12Q6UXS9 341 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 DPY19L2P2Q6ZN68 376 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 AHSA2Q719I0 299 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 EIF3MQ7L2H7 374 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 MRPL21Q7Z2W9 205 aaKnown RBP1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms