RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CNOT2Q9NZN8 540 aaKnown RBP6.76□□□□□ -1.33
USP40-216ENST00000485943 OR14J1Q9UGF5 321 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 OTOGQ6ZRI0 2925 aa6.76□□□□□ -1.33
USP40-216ENST00000485943 LOC105371242A0A075B767 164 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 IGHV3OR15-7A0A075B7D8 119 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 H0YJX3 145 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 J3QLI3 93 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 J3QT63 122 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 AKR7A2O43488 359 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 PLPP2O43688 288 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 ENSAO43768 121 aaKnown RBP6.75□□□□□ -1.33
USP40-216ENST00000485943 CRLF1O75462 422 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 IGHV2-70P01814 119 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 RAB3AP20336 220 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 FPR2P25090 351 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 MAPK3P27361 379 aaPredicted RBP6.75□□□□□ -1.33
USP40-216ENST00000485943 IL2RGP31785 369 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 SOX2P48431 317 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 RBP2P50120 134 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 CCR9P51686 369 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 MTCP1P56278 107 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 IKZF1Q13422 519 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 MED22Q15528 200 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 SMN1Q16637 294 aaKnown RBP6.75□□□□□ -1.33
USP40-216ENST00000485943 ZNF404Q494X3 552 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 TMEM255AQ5JRV8 349 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 FAM201AQ5SY85 155 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 FAM120AOSQ5T036 256 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 METTL11BQ5VVY1 283 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 RPL22L1Q6P5R6 122 aaKnown RBP6.75□□□□□ -1.33
USP40-216ENST00000485943 IL17RELQ6ZVW7 336 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 PRSS45Q7RTY3 260 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 EGFL6Q8IUX8 553 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 SERPINA12Q8IW75 414 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 SCCPDHQ8NBX0 429 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 TMEM185AQ8NFB2 350 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 OR10Z1Q8NGY1 313 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 PPP1R35Q8TAP8 253 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 Q8TCH9 128 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 GPR148Q8TDV2 347 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 PPP1R14AQ96A00 147 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 MED30Q96HR3 178 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 LYZL4Q96KX0 146 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 TMEM246Q9BRR3 403 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 SLITRK2Q9H156 845 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 METTL17Q9H7H0 456 aaPredicted RBP6.75□□□□□ -1.33
USP40-216ENST00000485943 G6PC2Q9NQR9 355 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 SNTG1Q9NSN8 517 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 ZNF319Q9P2F9 582 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 NKX1-2Q9UD57 310 aaPredicted RBP6.75□□□□□ -1.33
USP40-216ENST00000485943 DIMT1Q9UNQ2 313 aaKnown RBP6.75□□□□□ -1.33
USP40-216ENST00000485943 MYRFQ9Y2G1 1151 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 RRP15Q9Y3B9 282 aaKnown RBP6.75□□□□□ -1.33
USP40-216ENST00000485943 AUP1Q9Y679 476 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 V9GYS6 101 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 CELSR1Q9NYQ6 3014 aa6.75□□□□□ -1.33
USP40-216ENST00000485943 ACANP16112 2415 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 hCG_1809904A0A1W2PP81 198 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 A0A1W2PPE2 198 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 A0A1W2PR64 198 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 A0A1W2PRV1 198 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 SHISA3A0PJX4 238 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 C5orf63A6NC05 138 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 FAM157AC9JC47 383 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 PHF1O43189 567 aaPredicted RBP6.74□□□□□ -1.33
USP40-216ENST00000485943 XPNPEP2O43895 674 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 CSTBP04080 98 aaKnown RBP6.74□□□□□ -1.33
USP40-216ENST00000485943 HSMCR30P0CW71 290 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 ACKR3P25106 362 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 IL13RA1P78552 427 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 ADARB1P78563 741 aaKnown RBP6.74□□□□□ -1.33
USP40-216ENST00000485943 CCDC58Q4VC31 144 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 DMRTC1Q5HYR2 192 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 OR2G6Q5TZ20 316 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 Q8IYB0 196 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 RDH10Q8IZV5 341 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 ASCC1Q8N9N2 400 aaKnown RBP6.74□□□□□ -1.33
USP40-216ENST00000485943 OR5T2Q8NGG2 359 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 OR13C9Q8NGT0 318 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 OR14K1Q8NGZ2 314 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 OR52N1Q8NH53 320 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 ZNF418Q8TF45 676 aaPredicted RBP6.74□□□□□ -1.33
USP40-216ENST00000485943 EMG1Q92979 244 aaKnown RBP6.74□□□□□ -1.33
USP40-216ENST00000485943 C12orf43Q96C57 262 aaKnown RBP6.74□□□□□ -1.33
USP40-216ENST00000485943 PELI1Q96FA3 418 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 OPALINQ96PE5 141 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 JMJD8Q96S16 334 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 CHST5Q9GZS9 411 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 MS4A7Q9GZW8 240 aaPredicted RBP6.74□□□□□ -1.33
USP40-216ENST00000485943 FGF20Q9NP95 211 aaPredicted RBP6.74□□□□□ -1.33
USP40-216ENST00000485943 PCDHB16Q9NRJ7 776 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 TPSG1Q9NRR2 321 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 TMEM160Q9NX00 188 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 DCAF16Q9NXF7 216 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 ONECUT1Q9UBC0 465 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 NLKQ9UBE8 527 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 WNK2Q9Y3S1 2297 aa6.74□□□□□ -1.33
USP40-216ENST00000485943 YLPM1P49750 1951 aaKnown RBP6.73□□□□□ -1.33
USP40-216ENST00000485943 OR2AT4A6NND4 320 aa6.73□□□□□ -1.33
USP40-216ENST00000485943 PRR32B1ATL7 298 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms