RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 IGLV3-1P01715 115 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 UBCP0CG48 685 aaKnown RBP12.56□□□□□ -0.4
VARS-223ENST00000474643 MYL12AP19105 171 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 GPM6AP51674 278 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 PAX2Q02962 417 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 ST3GAL4Q11206 333 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 SLC9A3R2Q15599 337 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 KCTD21Q4G0X4 260 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 CLVS2Q5SYC1 327 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 ZBTB37Q5TC79 503 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 SYS1Q8N2H4 156 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 SCCPDHQ8NBX0 429 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 OR2G2Q8NGZ5 317 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 LRRC29Q8WV35 223 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 GATAD2BQ8WXI9 593 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 OR5P3Q8WZ94 311 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 ITPKCQ96DU7 683 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 ZNF747Q9BV97 191 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 CDCA4Q9BXL8 241 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 ERVK13-1Q9NX77 482 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 PCDHGB5Q9Y5G0 923 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 V9GYS6 101 aa12.56□□□□□ -0.4
VARS-223ENST00000474643 IGHV3OR15-7A0A075B7D8 119 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 MDFIC2A0A1B0GVS7 189 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 LOC107986453A0A1B0GWG9 222 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 A6NIN4 97 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 ZNF879B4DU55 563 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 ZNF732B4DXR9 585 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 C22orf46C9J442 243 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 CLDN34H7C241 214 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 CDIPTO14735 213 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 XPNPEP2O43895 674 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 TNFAIP8O95379 198 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 PTBP3O95758 552 aaKnown RBP12.55□□□□□ -0.4
VARS-223ENST00000474643 PLATP00750 562 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 CDK1P06493 297 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 SFTPBP07988 381 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 GBX2P52951 348 aaPredicted RBP12.55□□□□□ -0.4
VARS-223ENST00000474643 GMFBP60983 142 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 GNG3P63215 75 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 HOXA4Q00056 320 aaPredicted RBP12.55□□□□□ -0.4
VARS-223ENST00000474643 DEFB112Q30KQ8 113 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 DMRTC1Q5HYR2 192 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 TMEM244Q5VVB8 128 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 C16orf87Q6PH81 154 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 C9orf139Q6ZV77 190 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 PRSS48Q7RTY5 328 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 SLC36A1Q7Z2H8 476 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 PRSS35Q8N3Z0 413 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 STX19Q8N4C7 294 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 ZNF676Q8N7Q3 588 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 CCDC54Q8NEL0 328 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 OR14K1Q8NGZ2 314 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 RPL3LQ92901 407 aaKnown RBP12.55□□□□□ -0.4
VARS-223ENST00000474643 GPR173Q9NS66 373 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 ONECUT1Q9UBC0 465 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 DNAJB11Q9UBS4 358 aa12.55□□□□□ -0.4
VARS-223ENST00000474643 CAB39Q9Y376 341 aaPredicted RBP12.55□□□□□ -0.4
VARS-223ENST00000474643 A0A1B0GTI1 187 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 NKX6-3A6NJ46 265 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 OR5B21A6NL26 309 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 ECDO95905 644 aaPredicted RBP12.54□□□□□ -0.4
VARS-223ENST00000474643 SERPINA3P01011 423 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 RPSAP08865 295 aaKnown RBP12.54□□□□□ -0.4
VARS-223ENST00000474643 EGR1P18146 543 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 CFHR2P36980 270 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 KIR3DL2P43630 455 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 PDCD1Q15116 288 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 CEACAM21Q3KPI0 293 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 TMPRSS11AQ6ZMR5 421 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 C17orf107Q6ZR85 190 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 BTN2A1Q7KYR7 527 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 WDR86Q86TI4 376 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 CMTM4Q8IZR5 234 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 RDH10Q8IZV5 341 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 OR5A2Q8NGI9 324 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 OR52N1Q8NH53 320 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 HPSE2Q8WWQ2 592 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 PELI1Q96FA3 418 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 WDFY2Q96P53 400 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 ZNF649Q9BS31 505 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 COMMD4Q9H0A8 199 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 ISG20L2Q9H9L3 353 aaKnown RBP12.54□□□□□ -0.4
VARS-223ENST00000474643 CTSZQ9UBR2 303 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 SLC7A11Q9UPY5 501 aa12.54□□□□□ -0.4
VARS-223ENST00000474643 DHRS7CA6NNS2 312 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 POM121CA8CG34 1229 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 DVL1O14640 695 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 RGS10O43665 173 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 GATBO75879 557 aaKnown RBP12.53□□□□□ -0.4
VARS-223ENST00000474643 OCM2P0CE71 109 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 OCMP0CE72 109 aaPredicted RBP12.53□□□□□ -0.4
VARS-223ENST00000474643 MUC1P15941 1255 aaPredicted RBP12.53□□□□□ -0.4
VARS-223ENST00000474643 ZNF20P17024 532 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 CCL1P22362 96 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 OMGP23515 440 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 ARF6P62330 175 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 ALKBH1Q13686 389 aaKnown RBP12.53□□□□□ -0.4
VARS-223ENST00000474643 RUSC1-AS1Q66K80 236 aa12.53□□□□□ -0.4
VARS-223ENST00000474643 ZNF841Q6ZN19 808 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms