RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CPT2P23786 658 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 GNRHRP30968 328 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 DEGS2Q6QHC5 323 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 OR10AD1Q8NGE0 317 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 OR14K1Q8NGZ2 314 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 FER1L6-AS2Q96M78 137 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF552Q9H707 407 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 OBP2BQ9NPH6 170 aa11.98□□□□□ -0.49
CCDC88A-211ENST00000471947 A0A087WZY1 265 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 C10orf142B7Z368 130 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 PRKACAP17612 351 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 S100A11P31949 105 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF239Q16600 458 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 HACD4Q5VWC8 232 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 SLC25A28Q96A46 364 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 TAS2R3Q9NYW6 316 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 DOCK11Q5JSL3 2073 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 IGKV1D-8A0A087WSZ0 117 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 TRGV5A0A0B4J1U4 118 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 SIRPB1O00241 398 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 KLK10O43240 276 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 NEURL1O76050 574 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 FTH1P19P0C7X4 201 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 ADH6P28332 368 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 P2RY4P51582 365 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 ERVS71-1P61550 626 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 ZNF260Q3ZCT1 412 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 OR13C8Q8NGS7 320 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 CPNE4Q96A23 557 aaPredicted RBP11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 BPNT1O95861 308 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 HPNP05981 417 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 FCGR2CP31995 323 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 GSK3AP49840 483 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 RPS16P62249 146 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 SNTB1Q13884 538 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 ZBTB37Q5TC79 503 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 CPEB3Q8NE35 698 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 FDCSPQ8NFU4 85 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 OR51H1Q8NH63 302 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 OR2H1Q9GZK4 316 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 MAGT1Q9H0U3 335 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 PFDN2Q9UHV9 154 aa11.97□□□□□ -0.49
CCDC88A-211ENST00000471947 SLC22A20A6NK97 555 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 HSD17B6O14756 317 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 IGHEP01854 428 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 OR5H8P0DN80 308 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 PTGS2P35354 604 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 ECH1Q13011 328 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 WNT2BQ93097 391 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 CDH20Q9HBT6 801 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 OPN4Q9UHM6 478 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 DMXL2Q8TDJ6 3036 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 MAP1AP78559 2803 aaPredicted RBP11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 LOC102723996A0A087X1L8 192 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 CAMK2BQ13554 666 aa11.96□□□□□ -0.49
CCDC88A-211ENST00000471947 FAM208BQ5VWN6 2430 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 LOC102725191A0A1B0GVB3 256 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 C19orf67A6NJJ6 358 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 TPD52L2O43399 206 aaKnown RBP11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 ACP1P24666 158 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 MEF2DQ14814 521 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 IAH1Q2TAA2 248 aaPredicted RBP11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF767PQ75MW2 155 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 CALHM1Q8IU99 346 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 OR11L1Q8NGX0 322 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 TMED6Q8WW62 240 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 MS4A7Q9GZW8 240 aaPredicted RBP11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 FAM234AQ9H0X4 552 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 WDR13Q9H1Z4 485 aa11.96□□□□□ -0.5
CCDC88A-211ENST00000471947 A0A1W2PNV4 684 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 DHRS7CA6NNS2 312 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 B4E171 279 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 TSPAN7P41732 249 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 SLC25A24Q6NUK1 477 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF565Q8N9K5 539 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 TERB2Q8NHR7 220 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 DNAJB11Q9UBS4 358 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 RNF150Q9ULK6 438 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 ZNF175Q9Y473 711 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 ZFYVE26Q68DK2 2539 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 WIPF3A6NGB9 483 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 CTDSPLO15194 276 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 APOC1P02654 83 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 RLN2P04090 185 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 CELA3BP08861 270 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 CNN3Q15417 329 aaKnown RBP11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 FBXW12Q6X9E4 464 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 TPRX1Q8N7U7 411 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 EMC3Q9P0I2 261 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 PHF1O43189 567 aaPredicted RBP11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 SSX5O60225 188 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 SP1P08047 785 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 M6PRP20645 277 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 GLP1RP43220 463 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 CAV2P51636 162 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 TLE1Q04724 770 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 TMEM229BQ8NBD8 167 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 OR52H1Q8NGJ2 320 aa11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 ZC3H10Q96K80 434 aaKnown RBP11.95□□□□□ -0.5
CCDC88A-211ENST00000471947 SLC25A21Q9BQT8 299 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms