RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 CES1P1Q9UKY3 287 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 CAB39Q9Y376 341 aaPredicted RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 CHTOPQ9Y3Y2 248 aaKnown RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 F8P00451 2351 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 LAMA3Q16787 3333 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 ZCCHC6Q5VYS8 1495 aaKnown RBP0.34□□□□□ -2.36
UBXN4-207ENST00000471246 BCL9LQ86UU0 1499 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 COL6A6A6NMZ7 2263 aa0.34□□□□□ -2.36
UBXN4-207ENST00000471246 PIK3C2AO00443 1686 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 CACNA1EQ15878 2313 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 SLIT2O94813 1529 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 MGAQ8IWI9 3026 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 WDFY3Q8IZQ1 3526 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 WDR90Q96KV7 1748 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 CDH23Q9H251 3354 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 CADP27708 2225 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 MDC1Q14676 2089 aaKnown RBP0.33□□□□□ -2.36
UBXN4-207ENST00000471246 ATMQ13315 3056 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 BLMP54132 1417 aaPredicted RBP0.33□□□□□ -2.36
UBXN4-207ENST00000471246 SPATA31E1Q6ZUB1 1445 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 IGHV6-1A0A0B4J1U7 121 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 TRGV4A0A0C4DH28 118 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 SMCO3A2RU48 225 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 IGLL5B9A064 214 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 ANKRD65E5RJM6 399 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 PSPHP1O15172 72 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 PSCAO43653 123 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 EIF2S2P20042 333 aaKnown RBP0.33□□□□□ -2.36
UBXN4-207ENST00000471246 IL3RAP26951 378 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 CFHR2P36980 270 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 RGS6P49758 472 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 KDSRQ06136 332 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 OR1Q1Q15612 314 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 KLHL40Q2TBA0 621 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 KDM4DQ6B0I6 523 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 ZYG11AQ6WRX3 759 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 TRMT10CQ7L0Y3 403 aaKnown RBP0.33□□□□□ -2.36
UBXN4-207ENST00000471246 FAM228AQ86W67 206 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 TMEM25Q86YD3 366 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 RNF10Q8N5U6 811 aaKnown RBP0.33□□□□□ -2.36
UBXN4-207ENST00000471246 OR5AR1Q8NGP9 310 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 OR13C2Q8NGS9 318 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP0.33□□□□□ -2.36
UBXN4-207ENST00000471246 RSPH1Q8WYR4 309 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 OR5P3Q8WZ94 311 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 FBXO32Q969P5 355 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 DYNLL2Q96FJ2 89 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 SLC25A44Q96H78 314 aaPredicted RBP0.33□□□□□ -2.36
UBXN4-207ENST00000471246 PRRC1Q96M27 445 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 ALS2CR12Q96Q35 445 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 SFXN3Q9BWM7 321 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 SLC7A5P2Q9GIP4 190 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 CYP3A43Q9HB55 503 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 MRM3Q9HC36 420 aaKnown RBP0.33□□□□□ -2.36
UBXN4-207ENST00000471246 ACP6Q9NPH0 428 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 ZNF257Q9Y2Q1 563 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 ACOT9Q9Y305 439 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 PTPRMP28827 1452 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 MALRD1Q5VYJ5 2156 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 TRPM6Q9BX84 2022 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 CHD7Q9P2D1 2997 aa0.33□□□□□ -2.36
UBXN4-207ENST00000471246 SYNJ1O43426 1573 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 NEURL4Q96JN8 1562 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 CSPG4Q6UVK1 2322 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 BRWD1Q9NSI6 2320 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 SSH2Q76I76 1423 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 MYO15AQ9UKN7 3530 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 XIRP1Q702N8 1843 aaKnown RBP0.32□□□□□ -2.36
UBXN4-207ENST00000471246 HEATR9A2RTY3 570 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 SLC31A1O15431 190 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 HUS1O60921 280 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 CTNSO60931 367 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 CXorf1O96002 111 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 PTMAP06454 111 aaKnown RBP0.32□□□□□ -2.36
UBXN4-207ENST00000471246 KRTAP2-3P0C7H8 128 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 SEC11BP0C7V7 166 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 GABRG2P18507 467 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 GZMHP20718 246 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 BCKDHBP21953 392 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 CXCR1P25024 350 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 TAGLN2P37802 199 aaKnown RBP0.32□□□□□ -2.36
UBXN4-207ENST00000471246 MRPL19P49406 292 aaKnown RBP0.32□□□□□ -2.36
UBXN4-207ENST00000471246 ERFP50548 548 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 ACTR3P61158 418 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 GRB2P62993 217 aaKnown RBP0.32□□□□□ -2.36
UBXN4-207ENST00000471246 MAPRE2Q15555 327 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 HADHQ16836 314 aaKnown RBP0.32□□□□□ -2.36
UBXN4-207ENST00000471246 ANKDD1AQ495B1 522 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 CCDC183Q5T5S1 534 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 KCTD16Q68DU8 428 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 SPESP1Q6UW49 350 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 DEFB132Q7Z7B7 95 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 CPNE9Q8IYJ1 553 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 TTC29Q8NA56 475 aaPredicted RBP0.32□□□□□ -2.36
UBXN4-207ENST00000471246 SLC38A4Q969I6 547 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 ISG20Q96AZ6 181 aaKnown RBP0.32□□□□□ -2.36
UBXN4-207ENST00000471246 FXYD5Q96DB9 178 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 SNF8Q96H20 258 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 FAM19A4Q96LR4 140 aa0.32□□□□□ -2.36
UBXN4-207ENST00000471246 DERL3Q96Q80 235 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms