RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PIGMQ9H3S5 423 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 KCNJ16Q9NPI9 418 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 VSIG4Q9Y279 399 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 MYO7BQ6PIF6 2116 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 A0A0J9YW62 118 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 RAB27BO00194 218 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 DUS4LO95620 317 aaKnown RBP10.25□□□□□ -0.77
NPHP4-204ENST00000460696 HLA-HP01893 362 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 GABRA4P48169 554 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 DRAM2Q6UX65 266 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 OR2W3Q7Z3T1 314 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 LGI3Q8N145 548 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 PRSS33Q8NF86 280 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 ANGPTL6Q8NI99 470 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 GLYATL2Q8WU03 294 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 C2orf50Q96LR7 162 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 SULT4A1Q9BR01 284 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 OBP2BQ9NPH6 170 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 LHFPL6Q9Y693 200 aa10.25□□□□□ -0.77
NPHP4-204ENST00000460696 RAB32Q13637 225 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 AKR1C8PQ5T2L2 129 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 ZNF574Q6ZN55 896 aaPredicted RBP10.24□□□□□ -0.77
NPHP4-204ENST00000460696 OSR2Q8N2R0 312 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 OR51H1Q8NH63 302 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 FAM213BQ8TBF2 198 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 LINC00052Q96N35 136 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 SOX7Q9BT81 388 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 G6PC2Q9NQR9 355 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 KCNIP1Q9NZI2 227 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 OBSL1O75147 1896 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 VCANP13611 3396 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 LRP3O75074 770 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 RPL12P30050 165 aaKnown RBP10.24□□□□□ -0.77
NPHP4-204ENST00000460696 TEX30Q5JUR7 227 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 ST7LQ8TDW4 575 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 PBDC1Q9BVG4 233 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 TRAPPC2LQ9UL33 140 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 LINC00862A6NCI5 91 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 OR6C6A6NF89 314 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 HSD17B6O14756 317 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 ZNF14P17017 642 aaPredicted RBP10.24□□□□□ -0.77
NPHP4-204ENST00000460696 CD80P33681 288 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 RAC3P60763 192 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 CLN3Q13286 438 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 GPR157Q5UAW9 335 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 FAM212BQ9NTI7 297 aaPredicted RBP10.24□□□□□ -0.77
NPHP4-204ENST00000460696 KLRC4-KLRK1H3BQV0 150 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 SNAPINO95295 136 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 ITGB2P05107 769 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 PGA4P0DJD7 388 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 PGA3P0DJD8 388 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 PRKACAP17612 351 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 FSTP19883 344 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 ARF1P84077 181 aaKnown RBP10.24□□□□□ -0.77
NPHP4-204ENST00000460696 PABPC1L2AQ5JQF8 200 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 SAP25Q8TEE9 199 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 ABHD3Q8WU67 409 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 AIFM2Q9BRQ8 373 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 TGIF2Q9GZN2 237 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 PCDHB10Q9UN67 800 aa10.24□□□□□ -0.77
NPHP4-204ENST00000460696 H3BUI4 141 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 TRAF3IP2O43734 574 aaPredicted RBP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 TPPPO94811 219 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 CNR1P21554 472 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 LSM6P62312 80 aaKnown RBP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 FHL1Q13642 323 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 LTC4SQ16873 150 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 SPATA46Q5T0L3 261 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 CLEC18BQ6UXF7 455 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 LHFPL2Q6ZUX7 228 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 ZSCAN4Q8NAM6 433 aaPredicted RBP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 CHRNA10Q9GZZ6 450 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 TCFL5Q9UL49 500 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 ST8SIA3O43173 380 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 LIFP15018 202 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 FPR2P25090 351 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 SRD5A2P31213 254 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 IDH3GP51553 393 aaPredicted RBP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 TAGLNQ01995 201 aaKnown RBP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 TRA2AQ13595 282 aaKnown RBP eCLIP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 RAB35Q15286 201 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 C2orf68Q2NKX9 166 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 SLC25A42Q86VD7 318 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 OR5AP2Q8NGF4 316 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 RPS4Y2Q8TD47 263 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 SPSB1Q96BD6 273 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 LOXL4Q96JB6 756 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 FER1L6-AS2Q96M78 137 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 OCSTAMPQ9BR26 566 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 HDHD3Q9BSH5 251 aaPredicted RBP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 MS4A7Q9GZW8 240 aaPredicted RBP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 CLDN16Q9Y5I7 305 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 CDH23Q9H251 3354 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 PLSCR5A0PG75 271 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 TUBAL3A6NHL2 446 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 CD300LBA8K4G0 201 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 GRPP07492 148 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 ZNF260Q3ZCT1 412 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 AADACL3Q5VUY0 350 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 TMEM268Q5VZI3 342 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms