RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 GAFA1Q96PS6 74 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 PCGF1Q9BSM1 259 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 MRPS18AQ9NVS2 196 aaKnown RBP12.58□□□□□ -0.4
LIMS3-201ENST00000437679 FRRS1LQ9P0K9 344 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 RPUSD1Q9UJJ7 312 aaKnown RBP12.58□□□□□ -0.4
LIMS3-201ENST00000437679 MYRFQ9Y2G1 1151 aa12.58□□□□□ -0.4
LIMS3-201ENST00000437679 ANKRD65E5RJM6 399 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 SYNGR1O43759 233 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 PLATP00750 562 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 IGHA1P01876 353 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 ISG15P05161 165 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 ACAA1P09110 424 aaPredicted RBP12.57□□□□□ -0.4
LIMS3-201ENST00000437679 PGA5P0DJD9 388 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 PEX2P28328 305 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 CCR9P51686 369 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 CNN3Q15417 329 aaKnown RBP12.57□□□□□ -0.4
LIMS3-201ENST00000437679 ZNF691Q5VV52 312 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 BCL6BQ8N143 479 aaPredicted RBP12.57□□□□□ -0.4
LIMS3-201ENST00000437679 SYS1Q8N2H4 156 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 FGFRL1Q8N441 504 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 DHRSXQ8N5I4 330 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 SIGLECL1Q8N7X8 197 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 SETD9Q8NE22 299 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 OR52I1Q8NGK6 324 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 NPRL2Q8WTW4 380 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 PP6455Q8WZ26 134 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 H1FXQ92522 213 aaKnown RBP12.57□□□□□ -0.4
LIMS3-201ENST00000437679 PELI1Q96FA3 418 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 WDFY2Q96P53 400 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 PKIBQ9C010 78 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 CHST5Q9GZS9 411 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 CNTD2Q9H8S5 307 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 ERVK13-1Q9NX77 482 aa12.57□□□□□ -0.4
LIMS3-201ENST00000437679 SLC25A10Q9UBX3 287 aaPredicted RBP12.57□□□□□ -0.4
LIMS3-201ENST00000437679 SIGLEC5O15389 551 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 NOS1APO75052 506 aaPredicted RBP12.56□□□□□ -0.4
LIMS3-201ENST00000437679 WBP4O75554 376 aaKnown RBP12.56□□□□□ -0.4
LIMS3-201ENST00000437679 NXPH2O95156 264 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 SFTPBP07988 381 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 PSG2P11465 335 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 SELLP14151 372 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 ZNF20P17024 532 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 FUT6P51993 359 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 BPIFB3P59826 476 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 NANOS3P60323 173 aaKnown RBP12.56□□□□□ -0.4
LIMS3-201ENST00000437679 ARF6P62330 175 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 MRPL28Q13084 256 aaKnown RBP12.56□□□□□ -0.4
LIMS3-201ENST00000437679 ALKBH1Q13686 389 aaKnown RBP12.56□□□□□ -0.4
LIMS3-201ENST00000437679 UBE2V2Q15819 145 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 DGUOKQ16854 277 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 ACP7Q6ZNF0 438 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 C9orf139Q6ZV77 190 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 ANGPTL5Q86XS5 388 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 CMTM4Q8IZR5 234 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 ZNF676Q8N7Q3 588 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.56□□□□□ -0.4
LIMS3-201ENST00000437679 BORCS8Q96FH0 119 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 DMRTB1Q96MA1 342 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 ZNF488Q96MN9 340 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 ONECUT1Q9UBC0 465 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 HHLA2Q9UM44 414 aa12.56□□□□□ -0.4
LIMS3-201ENST00000437679 IGKV1D-17A0A075B6S4 117 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 IRGMA1A4Y4 181 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 OR4C45A6NMZ5 311 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 CLIC3O95833 236 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 TFF1P04155 84 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 RPSAP08865 295 aaKnown RBP12.55□□□□□ -0.4
LIMS3-201ENST00000437679 MMP9P14780 707 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 NDUFB7P17568 137 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 MPZP25189 248 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 CAPZA1P52907 286 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 GBX2P52951 348 aaPredicted RBP12.55□□□□□ -0.4
LIMS3-201ENST00000437679 CAV3P56539 151 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 IL24Q13007 206 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 PDCD1Q15116 288 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 SMN1Q16637 294 aaKnown RBP12.55□□□□□ -0.4
LIMS3-201ENST00000437679 CALHM1Q8IU99 346 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 ZDHHC22Q8N966 263 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 LY6G5BQ8NDX9 201 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 TMEM185AQ8NFB2 350 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 HAVCR2Q8TDQ0 301 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 FAM216AQ8WUB2 273 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 FGGYQ96C11 551 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 ADAT3Q96EY9 351 aaPredicted RBP12.55□□□□□ -0.4
LIMS3-201ENST00000437679 TBX15Q96SF7 602 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 NRIP2Q9BQI9 281 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 DCTN5Q9BTE1 182 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 SIRPDQ9H106 197 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 ISG20L2Q9H9L3 353 aaKnown RBP12.55□□□□□ -0.4
LIMS3-201ENST00000437679 FGF20Q9NP95 211 aaPredicted RBP12.55□□□□□ -0.4
LIMS3-201ENST00000437679 ZNF222Q9UK12 451 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 KPTNQ9Y664 436 aa12.55□□□□□ -0.4
LIMS3-201ENST00000437679 RFPL4AA6NLU0 287 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 RFPL4AL1F8VTS6 287 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 CCDC159P0C7I6 412 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 OCM2P0CE71 109 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 OCMP0CE72 109 aaPredicted RBP12.54□□□□□ -0.4
LIMS3-201ENST00000437679 PRKACBP22694 351 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 RBP2P50120 134 aa12.54□□□□□ -0.4
LIMS3-201ENST00000437679 ACTG1P63261 375 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms