RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SUMF1Q8NBK3 374 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 OR5L1Q8NGL2 311 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 SLC39A7Q92504 469 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 PGAM5Q96HS1 289 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 WNT16Q9UBV4 365 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 TRAF3IP2O43734 574 aaPredicted RBP18.36■□□□□ 0.53
CTCF-202ENST00000401394 DEDDO75618 318 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 YIF1AO95070 293 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 GSK3AP49840 483 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 CLINT1Q14677 625 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 SULF2Q8IWU5 870 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 RGCCQ9H4X1 137 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 GPR173Q9NS66 373 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 GPR27Q9NS67 375 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 ANAPC10Q9UM13 185 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 PUS1Q9Y606 427 aaKnown RBP eCLIP18.36■□□□□ 0.53
CTCF-202ENST00000401394 TRBV11-1A0A0K0K1C0 115 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 ANKUB1A6NFN9 424 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 CEACAM18A8MTB9 384 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 PRH1P02810 166 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 PIGPP57054 158 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 DDIT4LQ96D03 193 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 FGF21Q9NSA1 209 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 PLEKHJ1Q9NW61 149 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 C14orf166Q9Y224 244 aaKnown RBP18.36■□□□□ 0.53
CTCF-202ENST00000401394 MMP24Q9Y5R2 645 aa18.36■□□□□ 0.53
CTCF-202ENST00000401394 IFNA4P05014 189 aa18.35■□□□□ 0.53
CTCF-202ENST00000401394 PATE4P0C8F1 98 aa18.35■□□□□ 0.53
CTCF-202ENST00000401394 OMGP23515 440 aa18.35■□□□□ 0.53
CTCF-202ENST00000401394 ZP4Q12836 540 aa18.35■□□□□ 0.53
CTCF-202ENST00000401394 NOXO1Q8NFA2 376 aa18.35■□□□□ 0.53
CTCF-202ENST00000401394 URM1Q9BTM9 101 aaKnown RBP18.35■□□□□ 0.53
CTCF-202ENST00000401394 RSPO1Q2MKA7 263 aaPredicted RBP18.35■□□□□ 0.53
CTCF-202ENST00000401394 PIGLQ9Y2B2 252 aa18.35■□□□□ 0.53
CTCF-202ENST00000401394 CDRT15L2A8MXV6 281 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 OR2J2O76002 312 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 SNCAP37840 140 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 PLA2G5P39877 138 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 CLDN17P56750 224 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 C17orf67Q0P5P2 114 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 SLAMF9Q96A28 289 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 GNRHR2Q96P88 292 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 URGCP-MRPS24S4R325 110 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 PRRC2CQ9Y520 2896 aaKnown RBP18.34■□□□□ 0.53
CTCF-202ENST00000401394 UMAD1C9J7I0 102 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 C3orf80F5H4A9 247 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 NME1P15531 152 aaKnown RBP18.34■□□□□ 0.53
CTCF-202ENST00000401394 SNAI3Q3KNW1 292 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 ZNF343Q6P1L6 599 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 ZDHHC12Q96GR4 267 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 RNF122Q9H9V4 155 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 PARP11Q9NR21 331 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 PPP4R1LQ9P1A2 415 aa18.34■□□□□ 0.53
CTCF-202ENST00000401394 FAM230AA0A1W2PPH8 454 aa18.33■□□□□ 0.53
CTCF-202ENST00000401394 IGHG1P01857 330 aa18.33■□□□□ 0.53
CTCF-202ENST00000401394 CAMLGP49069 296 aa18.33■□□□□ 0.53
CTCF-202ENST00000401394 TMEM182Q6ZP80 229 aaPredicted RBP18.33■□□□□ 0.53
CTCF-202ENST00000401394 CELA2AP08217 269 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 JMJD7P0C870 316 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 ZNF239Q16600 458 aaKnown RBP18.33■□□□□ 0.52
CTCF-202ENST00000401394 SKA3Q8IX90 412 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 EMG1Q92979 244 aaKnown RBP18.33■□□□□ 0.52
CTCF-202ENST00000401394 ZMAT5Q9UDW3 170 aaKnown RBP18.33■□□□□ 0.52
CTCF-202ENST00000401394 FOXI3A8MTJ6 420 aaPredicted RBP18.33■□□□□ 0.52
CTCF-202ENST00000401394 RAB5AP20339 215 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 APOBEC1P41238 236 aaKnown RBP18.33■□□□□ 0.52
CTCF-202ENST00000401394 SULT1A1P50225 295 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 C9orf152Q5JTZ5 239 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 THEM4Q5T1C6 240 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 OR6S1Q8NH40 331 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 ZNF160Q9HCG1 818 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 C1orf123Q9NWV4 160 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 ALKBH4Q9NXW9 302 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 DNAJB11Q9UBS4 358 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 FBLN5Q9UBX5 448 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 PADI1Q9ULC6 663 aa18.33■□□□□ 0.52
CTCF-202ENST00000401394 ZNF850A8MQ14 1090 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 UBE2CO00762 179 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 OR5H8P0DN80 308 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 AGAP20933 346 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 MEX3BQ6ZN04 569 aaKnown RBP18.32■□□□□ 0.52
CTCF-202ENST00000401394 C15orf54Q8N8G6 183 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 SSC4DQ8WTU2 575 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 MRPL38Q96DV4 380 aaKnown RBP18.32■□□□□ 0.52
CTCF-202ENST00000401394 ZNF385AQ96PM9 386 aaKnown RBP18.32■□□□□ 0.52
CTCF-202ENST00000401394 UCN2Q96RP3 112 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 WDR77Q9BQA1 342 aaPredicted RBP18.32■□□□□ 0.52
CTCF-202ENST00000401394 IGHV1OR21-1A0A087WYE8 117 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 ARPC4-TTLL3A0A0A6YYG9 625 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 FIGNL2A6NMB9 653 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 CD38P28907 300 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 PLPPR5Q32ZL2 321 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 PDZD11Q5EBL8 140 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 FAM89BQ8N5H3 189 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 FAM213BQ8TBF2 198 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 STARD10Q9Y365 291 aa18.32■□□□□ 0.52
CTCF-202ENST00000401394 CCDC187A0A096LP49 1063 aa18.31■□□□□ 0.52
CTCF-202ENST00000401394 LILRA5A6NI73 299 aa18.31■□□□□ 0.52
CTCF-202ENST00000401394 TNFSF12O43508 249 aa18.31■□□□□ 0.52
CTCF-202ENST00000401394 EIF1BO60739 113 aaKnown RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms