RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 PRRC2CQ9Y520 2896 aaKnown RBP12.15□□□□□ -0.46
SNCA-204ENST00000394989 TRBV23-1A0A0A0MS06 115 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 F8W036 122 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 TNFSF15O95150 251 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 PPP3CBP16298 524 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 PVALBP20472 110 aaPredicted RBP12.15□□□□□ -0.46
SNCA-204ENST00000394989 SERPINA2P20848 420 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 FLI1Q01543 452 aaPredicted RBP12.15□□□□□ -0.46
SNCA-204ENST00000394989 SCRN3Q0VDG4 424 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 FAM209BQ5JX69 171 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 TSPO2Q5TGU0 170 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 GALNTL5Q7Z4T8 443 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 STEAP2Q8NFT2 490 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 OCSTAMPQ9BR26 566 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 URM1Q9BTM9 101 aaKnown RBP12.15□□□□□ -0.46
SNCA-204ENST00000394989 ZNF471Q9BX82 626 aaPredicted RBP12.15□□□□□ -0.46
SNCA-204ENST00000394989 GHRLQ9UBU3 117 aa12.15□□□□□ -0.46
SNCA-204ENST00000394989 IGKV1-27A0A075B6S5 117 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 FAM166BA8MTA8 275 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 HMSDA8MTL9 139 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 FAM25EA8MYX2 175 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 TBPP20226 339 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 SWI5Q1ZZU3 235 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 ZDHHC22Q8N966 263 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 FREM1Q5H8C1 2179 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 TRAV14DV4A0A0A6YYC5 116 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 PRSS44E7EML9 344 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 MMP7P09237 267 aaPredicted RBP12.14□□□□□ -0.47
SNCA-204ENST00000394989 HTR5AP47898 357 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 LIN54Q6MZP7 749 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 TMEM45BQ96B21 275 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 TIMM10BQ9Y5J6 103 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 IGKV3D-15A0A087WSY6 115 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 OR6C65A6NJZ3 312 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 CCSO14618 274 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 IL2RAP01589 272 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 LCATP04180 440 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 PNLIPRP3Q17RR3 467 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 UNQ6126/PRO20091Q6UXV3 157 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 HOGA1Q86XE5 327 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 OR5M8Q8NGP6 311 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 TM2D1Q9BX74 207 aa12.14□□□□□ -0.47
SNCA-204ENST00000394989 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.14□□□□□ -0.47
SNCA-204ENST00000394989 LAMA5O15230 3695 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 C9orf170A2RU37 121 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 DHRS7CA6NNS2 312 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 ZNF708P17019 499 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 FGL1Q08830 312 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 LYG2Q86SG7 212 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 OR5M9Q8NGP3 310 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 MARCH1Q8TCQ1 289 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 ASF1BQ9NVP2 202 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 ZNF407Q9C0G0 2248 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 EFSO43281 561 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 CD34P28906 385 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 VAX1Q5SQQ9 334 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 PUSL1Q8N0Z8 303 aaKnown RBP12.13□□□□□ -0.47
SNCA-204ENST00000394989 TMEM251Q8N6I4 163 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 CPEB3Q8NE35 698 aaKnown RBP12.13□□□□□ -0.47
SNCA-204ENST00000394989 CCDC54Q8NEL0 328 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 PECRQ9BY49 303 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 WDR13Q9H1Z4 485 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 TMEM9BQ9NQ34 198 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 NOSIPQ9Y314 301 aaKnown RBP12.13□□□□□ -0.47
SNCA-204ENST00000394989 PCNX2A6NKB5 2137 aa12.13□□□□□ -0.47
SNCA-204ENST00000394989 BLVRBP30043 206 aaPredicted RBP12.12□□□□□ -0.47
SNCA-204ENST00000394989 AIMP2Q13155 320 aaKnown RBP12.12□□□□□ -0.47
SNCA-204ENST00000394989 ATP1A1-AS1Q5TC04 95 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 ZNF546Q86UE3 836 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 TUSC5Q8IXB3 177 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 SLC7A10Q9NS82 523 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 NOP16Q9Y3C1 178 aaKnown RBP12.12□□□□□ -0.47
SNCA-204ENST00000394989 IFNA6P05013 189 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 SPP1P10451 314 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 FOXG1P55316 489 aaPredicted RBP12.12□□□□□ -0.47
SNCA-204ENST00000394989 MTCP1P56278 107 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 ZNF92Q03936 586 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 HFEQ30201 348 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 MITD1Q8WV92 249 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 ASB13Q8WXK3 278 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 MAFIPQ8WZ33 124 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 CDC6Q99741 560 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 DNTTIP1Q9H147 329 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 ZNF581Q9P0T4 197 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 B4GALT7Q9UBV7 327 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 MSTNO14793 375 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 SPRY1O43609 319 aaPredicted RBP12.12□□□□□ -0.47
SNCA-204ENST00000394989 ANGPTL7O43827 346 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 MRPL33O75394 65 aaKnown RBP12.12□□□□□ -0.47
SNCA-204ENST00000394989 CD8AP01732 235 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 EDN3P14138 238 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 GMFBP60983 142 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 POLR2GP62487 172 aaKnown RBP eCLIP12.12□□□□□ -0.47
SNCA-204ENST00000394989 IL13RA1P78552 427 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 SRSF4Q08170 494 aaKnown RBP12.12□□□□□ -0.47
SNCA-204ENST00000394989 RIPPLY1Q0D2K3 151 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 ARFRP1Q13795 201 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 FAM189A2Q15884 450 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 TMEM42Q69YG0 159 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 RBMS3Q6XE24 437 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms