RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 OTOSQ8NHW6 89 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 MMP25Q9NPA2 562 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 TAAR3PQ9P1P4 343 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 PCOLCE2Q9UKZ9 415 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 FOXJ3Q9UPW0 622 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 EVPLQ92817 2033 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 CYC1P08574 325 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 GALNSP34059 522 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 TCL1AP56279 114 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 TMEM215Q68D42 235 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 NHLRC1Q6VVB1 395 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 OR5C1Q8NGR4 320 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 HDGFL3Q9Y3E1 203 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 C4AP0C0L4 1744 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 CD1EP15812 388 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 LYPD8Q6UX82 237 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 GVQW1Q8N7I0 195 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 OR1L3Q8NH93 324 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 TRAV20A0A0B4J274 112 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF716A6NP11 495 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 AGFG2O95081 481 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 SLC38A11Q08AI6 406 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 GUK1Q16774 197 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 TMEM97Q5BJF2 176 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 ZPBPQ9BS86 351 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 GNG4P50150 75 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 TNXAQ16473 311 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 B3GNTL1Q67FW5 361 aaPredicted RBP12.24□□□□□ -0.45
COL4A1-201ENST00000375820 TMEM65Q6PI78 240 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 CCDC190Q86UF4 302 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 WFDC3Q8IUB2 231 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 PRSS3P2Q8NHM4 247 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 PPIL1Q9Y3C6 166 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 TOX3O15405 576 aaPredicted RBP12.24□□□□□ -0.45
COL4A1-201ENST00000375820 FUT3P21217 361 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 HTR1DP28221 377 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 RTP5Q14D33 572 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 HFEQ30201 348 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 TMEM128Q5BJH2 165 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 PABPC1L2AQ5JQF8 200 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 DHRS11Q6UWP2 260 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 TEX101Q9BY14 249 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 LPAR2Q9HBW0 351 aa12.24□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF628Q5EBL2 1059 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 MCHR2Q969V1 340 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 TMEM140Q9NV12 185 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF32P17041 273 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 TNFAIP6P98066 277 aaPredicted RBP12.23□□□□□ -0.45
COL4A1-201ENST00000375820 TSPO2Q5TGU0 170 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 PRR7Q8TB68 274 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 IP6K3Q96PC2 410 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 UBTD1Q9HAC8 227 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 SIRT5Q9NXA8 310 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 SBK3P0C264 359 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 NPY1RP25929 384 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 TPBGQ13641 420 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 SLC35E4Q6ICL7 350 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF385DQ9H6B1 395 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 UQCC1Q9NVA1 299 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 COA4Q9NYJ1 87 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 CACNG5Q9UF02 275 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 IGHV3-21A0A0B4J1V1 117 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 LIMS3P0CW19 117 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 LIMS4P0CW20 117 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 PMS2P11Q13670 270 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 DOK1Q99704 481 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 WDR61Q9GZS3 305 aaKnown RBP12.23□□□□□ -0.45
COL4A1-201ENST00000375820 SCN11AQ9UI33 1791 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 A0A1B0GTQ1 180 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 FBP1P09467 338 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 CALCRP30988 508 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 RAE1P78406 368 aaKnown RBP12.23□□□□□ -0.45
COL4A1-201ENST00000375820 PPP1R1AQ13522 171 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 SLC36A1Q7Z2H8 476 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 GPR137Q96N19 417 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 IL36GQ9NZH8 169 aa12.23□□□□□ -0.45
COL4A1-201ENST00000375820 KCNAB3O43448 404 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 TNFRSF1AP19438 455 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 ACVR1Q04771 509 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 ST3GAL2Q16842 350 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 MOGAT2Q3SYC2 334 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 FAHD1Q6P587 224 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF561Q8N587 486 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 LILRB1Q8NHL6 650 aaPredicted RBP12.22□□□□□ -0.45
COL4A1-201ENST00000375820 CHRDL1Q9BU40 450 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 MYOZ1Q9NP98 299 aaPredicted RBP12.22□□□□□ -0.45
COL4A1-201ENST00000375820 SPTY2D1-AS1A0A0U1RR47 76 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 C3orf85A0A1B0GTC6 90 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 J3QR89 54 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 ZNHIT1O43257 154 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF737O75373 536 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 CD96P40200 585 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 GNG3P63215 75 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 NKG7Q16617 165 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 TEX261Q6UWH6 196 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF793Q6ZN11 406 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 DUSP18Q8NEJ0 188 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 FLYWCH2Q96CP2 140 aaKnown RBP12.22□□□□□ -0.45
COL4A1-201ENST00000375820 TMEM56Q96MV1 263 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 TSPAN32Q96QS1 320 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms