RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 KLK2P20151 261 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 RPUSD3Q6P087 351 aaKnown RBP19.61■□□□□ 0.73
TRIM28-202ENST00000341753 TCTEX1D2Q8WW35 142 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 PIGTQ969N2 578 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 LIME1Q9H400 295 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 ZNF581Q9P0T4 197 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 PUS1Q9Y606 427 aaKnown RBP eCLIP19.61■□□□□ 0.73
TRIM28-202ENST00000341753 A0A1W2PNR3 127 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 FBLP22087 321 aaKnown RBP19.61■□□□□ 0.73
TRIM28-202ENST00000341753 PPP1CCP36873 323 aaKnown RBP19.61■□□□□ 0.73
TRIM28-202ENST00000341753 EIF2S3P41091 472 aaKnown RBP19.61■□□□□ 0.73
TRIM28-202ENST00000341753 RRADP55042 308 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 ZNF239Q16600 458 aaKnown RBP19.61■□□□□ 0.73
TRIM28-202ENST00000341753 CRIP3Q6Q6R5 217 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 C17orf82Q86X59 251 aaPredicted RBP19.61■□□□□ 0.73
TRIM28-202ENST00000341753 ZNF441Q8N8Z8 693 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 UBAC2Q8NBM4 344 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 TAAR9Q96RI9 348 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 MRPL13Q9BYD1 178 aaKnown RBP19.61■□□□□ 0.73
TRIM28-202ENST00000341753 C19orf12Q9NSK7 152 aa19.61■□□□□ 0.73
TRIM28-202ENST00000341753 AP4M1O00189 453 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 DANCRP0C864 163 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 DDIT4LQ96D03 193 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 GNRHR2Q96P88 292 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 TCEAL7Q9BRU2 100 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 ZNF814B7Z6K7 855 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 FAHP16930 419 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 HNRNPKP61978 463 aaKnown RBP eCLIP19.6■□□□□ 0.73
TRIM28-202ENST00000341753 MYBPHQ13203 477 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 COL19A1Q14993 1142 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 C9orf152Q5JTZ5 239 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 PLXDC2Q6UX71 529 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 FAM89BQ8N5H3 189 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 PHF7Q9BWX1 381 aaPredicted RBP19.6■□□□□ 0.73
TRIM28-202ENST00000341753 IGHV1OR21-1A0A087WYE8 117 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 ANKUB1A6NFN9 424 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 RAMP1O60894 148 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 FCGR2AP12318 317 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 NXPH1P58417 271 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 RARRES2Q99969 163 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 TUBD1Q9UJT1 453 aa19.6■□□□□ 0.73
TRIM28-202ENST00000341753 ASCC3Q8N3C0 2202 aaKnown RBP19.59■□□□□ 0.73
TRIM28-202ENST00000341753 TNFSF12-TNFSF13A0A0A6YY99 330 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 VSTM2BA6NLU5 285 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 MSTNO14793 375 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 TMEM225BP0DP42 221 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 CEBPGP53567 150 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 NHLH2Q02577 135 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 KCNJ16Q9NPI9 418 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 LUZP4Q9P127 313 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 PADI1Q9ULC6 663 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 PPIHO43447 177 aaKnown RBP19.59■□□□□ 0.73
TRIM28-202ENST00000341753 PIAS2O75928 621 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 OPRM1P35372 400 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 PIGPP57054 158 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 FXYD4P59646 89 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 RNF4P78317 190 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 LYZL2Q7Z4W2 148 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 UEVLDQ8IX04 471 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 OR14K1Q8NGZ2 314 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 LYZL4Q96KX0 146 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 PNRC2Q9NPJ4 139 aaKnown RBP19.59■□□□□ 0.73
TRIM28-202ENST00000341753 MMP24Q9Y5R2 645 aa19.59■□□□□ 0.73
TRIM28-202ENST00000341753 FOXI3A8MTJ6 420 aaPredicted RBP19.58■□□□□ 0.73
TRIM28-202ENST00000341753 UBE2V2Q15819 145 aa19.58■□□□□ 0.73
TRIM28-202ENST00000341753 THEM4Q5T1C6 240 aa19.58■□□□□ 0.73
TRIM28-202ENST00000341753 CDPF1Q6NVV7 123 aa19.58■□□□□ 0.73
TRIM28-202ENST00000341753 TMEM182Q6ZP80 229 aaPredicted RBP19.58■□□□□ 0.73
TRIM28-202ENST00000341753 NOXO1Q8NFA2 376 aa19.58■□□□□ 0.73
TRIM28-202ENST00000341753 FAM213BQ8TBF2 198 aa19.58■□□□□ 0.73
TRIM28-202ENST00000341753 PGAM5Q96HS1 289 aa19.58■□□□□ 0.73
TRIM28-202ENST00000341753 JSRP1Q96MG2 331 aaPredicted RBP19.58■□□□□ 0.73
TRIM28-202ENST00000341753 MOB1AQ9H8S9 216 aa19.58■□□□□ 0.73
TRIM28-202ENST00000341753 UCK1Q9HA47 277 aa19.58■□□□□ 0.73
TRIM28-202ENST00000341753 CRYM-AS1A6NIL9 109 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 F5H5K5 113 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 OR5AC1P0C628 307 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 PGA4P0DJD7 388 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 PGA3P0DJD8 388 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 APOBEC1P41238 236 aaKnown RBP19.58■□□□□ 0.72
TRIM28-202ENST00000341753 PHLDA2Q53GA4 152 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 DOK3Q7L591 496 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 NAXEQ8NCW5 288 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 ST8SIA1Q92185 356 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 DYRK2Q92630 601 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 TUBA4BQ9H853 241 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 PLEKHJ1Q9NW61 149 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 ALKBH4Q9NXW9 302 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 KLHL13Q9P2N7 655 aa19.58■□□□□ 0.72
TRIM28-202ENST00000341753 NXT1Q9UKK6 140 aaKnown RBP19.58■□□□□ 0.72
TRIM28-202ENST00000341753 GPR37O15354 613 aa19.57■□□□□ 0.72
TRIM28-202ENST00000341753 PRSS12P56730 875 aa19.57■□□□□ 0.72
TRIM28-202ENST00000341753 SLC35A1P78382 337 aa19.57■□□□□ 0.72
TRIM28-202ENST00000341753 BRICD5Q6PL45 260 aa19.57■□□□□ 0.72
TRIM28-202ENST00000341753 SLC25A45Q8N413 288 aa19.57■□□□□ 0.72
TRIM28-202ENST00000341753 SSC4DQ8WTU2 575 aa19.57■□□□□ 0.72
TRIM28-202ENST00000341753 S100A13Q99584 98 aa19.57■□□□□ 0.72
TRIM28-202ENST00000341753 WDR77Q9BQA1 342 aaPredicted RBP19.57■□□□□ 0.72
TRIM28-202ENST00000341753 GGACTQ9BVM4 153 aa19.57■□□□□ 0.72
TRIM28-202ENST00000341753 ZDHHC8Q9ULC8 765 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms