RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 DNM1P46Q6ZS02 220 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 SLC25A26Q70HW3 274 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 LYPD6Q86Y78 171 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 ANKRD13BQ86YJ7 626 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 GCSAMQ8N6F7 178 aa18.66■□□□□ 0.58
SDC3-202ENST00000339394 NAA50Q9GZZ1 169 aaKnown RBP18.66■□□□□ 0.58
SDC3-202ENST00000339394 AKR7A2O43488 359 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 SPRY1O43609 319 aaPredicted RBP18.65■□□□□ 0.58
SDC3-202ENST00000339394 LHBP01229 141 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 ZP1P60852 638 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 CLEC12BQ2HXU8 276 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 Q5PR19 223 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 SLC16A12Q6ZSM3 486 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 CDH26Q8IXH8 852 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 C1orf87Q8N0U7 546 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 JAGN1Q8N5M9 183 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 ZNF671Q8TAW3 534 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 LRRC29Q8WV35 223 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 FAM168AQ92567 244 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 POLDIP2Q9Y2S7 368 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 AK6Q9Y3D8 172 aaKnown RBP18.65■□□□□ 0.58
SDC3-202ENST00000339394 CCDC168Q8NDH2 2452 aa18.65■□□□□ 0.58
SDC3-202ENST00000339394 CLDN25C9JDP6 229 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 ZNF205O95201 554 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 CSF3P09919 207 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 TGFBR1P36897 503 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 ART1P52961 327 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 FAM201AQ5SY85 155 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 PRSS57Q6UWY2 283 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 KRTAP1-3Q8IUG1 177 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 OR10Z1Q8NGY1 313 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 GFI1Q99684 422 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 MTCH1Q9NZJ7 389 aa18.64■□□□□ 0.58
SDC3-202ENST00000339394 PPIHO43447 177 aaKnown RBP18.64■□□□□ 0.57
SDC3-202ENST00000339394 ANGPTL7O43827 346 aa18.64■□□□□ 0.57
SDC3-202ENST00000339394 GIFP27352 417 aa18.64■□□□□ 0.57
SDC3-202ENST00000339394 PTGFRP43088 359 aa18.64■□□□□ 0.57
SDC3-202ENST00000339394 DSCR9P59020 149 aa18.64■□□□□ 0.57
SDC3-202ENST00000339394 GLT8D1Q68CQ7 371 aa18.64■□□□□ 0.57
SDC3-202ENST00000339394 OR51F2Q8NH61 342 aa18.64■□□□□ 0.57
SDC3-202ENST00000339394 C10orf105Q8TEF2 133 aa18.64■□□□□ 0.57
SDC3-202ENST00000339394 ZNF488Q96MN9 340 aa18.64■□□□□ 0.57
SDC3-202ENST00000339394 CNTD2Q9H8S5 307 aa18.64■□□□□ 0.57
SDC3-202ENST00000339394 CYSRT1A8MQ03 144 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 SRRM5B3KS81 715 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 C3orf80F5H4A9 247 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 NDUFS8O00217 210 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 GABARAPO95166 117 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 PGA5P0DJD9 388 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 TMEM225BP0DP42 221 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 CD37P11049 281 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 SDC2P34741 201 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 OR3A4PP47883 348 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 MTNR1BP49286 362 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 GMFBP60983 142 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 C1QL2Q7Z5L3 287 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 MKXQ8IYA7 352 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 BOLLQ8N9W6 283 aaKnown RBP18.63■□□□□ 0.57
SDC3-202ENST00000339394 PNLDC1Q8NA58 520 aaKnown RBP18.63■□□□□ 0.57
SDC3-202ENST00000339394 TNFAIP8L1Q8WVP5 186 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 SLAMF9Q96A28 289 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 FOXRED1Q96CU9 486 aaPredicted RBP18.63■□□□□ 0.57
SDC3-202ENST00000339394 UQCC2Q9BRT2 126 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 FAM192AQ9GZU8 254 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 WDR13Q9H1Z4 485 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 NPTNQ9Y639 398 aa18.63■□□□□ 0.57
SDC3-202ENST00000339394 IGKV1-12A0A0C4DH73 117 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 WNT9BO14905 357 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 NOS1APO75052 506 aaPredicted RBP18.62■□□□□ 0.57
SDC3-202ENST00000339394 CYB5AP00167 134 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 IGKV1D-12P01611 117 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 ACAA1P09110 424 aaPredicted RBP18.62■□□□□ 0.57
SDC3-202ENST00000339394 EGR1P18146 543 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 NCS1P62166 190 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 CTF1Q16619 201 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 SHEQ5VZ18 495 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 SFRP4Q6FHJ7 346 aaPredicted RBP18.62■□□□□ 0.57
SDC3-202ENST00000339394 PEG10Q86TG7 708 aaKnown RBP18.62■□□□□ 0.57
SDC3-202ENST00000339394 CLVS1Q8IUQ0 354 aaPredicted RBP18.62■□□□□ 0.57
SDC3-202ENST00000339394 BATF2Q8N1L9 274 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 ZSCAN4Q8NAM6 433 aaPredicted RBP18.62■□□□□ 0.57
SDC3-202ENST00000339394 POC1AQ8NBT0 407 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 C19orf18Q8NEA5 215 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 NRIP2Q9BQI9 281 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 ITGB1BP2Q9UKP3 347 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 WIPI2Q9Y4P8 454 aa18.62■□□□□ 0.57
SDC3-202ENST00000339394 PPIAL4EA0A075B759 164 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 IGHV4-30-2A0A087WSY4 118 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 PPIAL4DF5H284 164 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 F8VVB4 439 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 F8VWA3 439 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP18.61■□□□□ 0.57
SDC3-202ENST00000339394 PDCD5O14737 125 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 PPIAL4FP0DN26 164 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 RAB3BP20337 219 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 GPR6P46095 362 aaPredicted RBP18.61■□□□□ 0.57
SDC3-202ENST00000339394 NPBWR2P48146 333 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 PSMD7P51665 324 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 OR10A3P58181 314 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 VBP1P61758 197 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms