RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 Q5PR19 223 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 ZMIZ1Q9ULJ6 1067 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 HMX2A2RU54 273 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 AGFG2O95081 481 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 BMI1P35226 326 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 INSL4Q14641 139 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 GUK1Q16774 197 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 MOGAT2Q3SYC2 334 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 TMEM56Q96MV1 263 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 RPL29P47914 159 aaKnown RBP11.29□□□□□ -0.6
SDC3-201ENST00000336798 PPP1CBP62140 327 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 RPS4XP62701 263 aaKnown RBP11.29□□□□□ -0.6
SDC3-201ENST00000336798 RANP62826 216 aaKnown RBP11.29□□□□□ -0.6
SDC3-201ENST00000336798 LINC00303Q3SY05 128 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 OR2A2Q6IF42 318 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 OR1L3Q8NH93 324 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 ARHGAP5-AS1Q96IT6 56 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 KIAA1324LA8MWY0 1029 aaPredicted RBP11.28□□□□□ -0.6
SDC3-201ENST00000336798 MS4A18H0YCH9 400 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 M0R143 59 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 CIDEAO60543 219 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 RAB7AP51149 207 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 ZNF117Q03924 483 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 MS4A18Q3C1V0 323 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 DTD1Q8TEA8 209 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 HGDQ93099 445 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 RNF2Q99496 336 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 CHRDL1Q9BU40 450 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 TMEM30AQ9NV96 361 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 CEBPEQ15744 281 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 TOMM20LQ6UXN7 152 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 PRSS41Q7RTY9 318 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 TMEM37Q8WXS4 190 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 GABARAPL3Q9BY60 117 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 CHD2O14647 1828 aaKnown RBP11.28□□□□□ -0.6
SDC3-201ENST00000336798 IGHV5-51A0A0C4DH38 117 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 SPTY2D1-AS1A0A0U1RR47 76 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 ZNF98A6NK75 572 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 LEUTXA8MZ59 168 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 PYCARD-AS1I3L0S3 204 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 TIAL1Q01085 375 aaKnown RBP eCLIP11.28□□□□□ -0.6
SDC3-201ENST00000336798 TFF2Q03403 129 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 ASAH1Q13510 395 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 ETV3LQ6ZN32 361 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 TM4SF19Q96DZ7 209 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 WDR61Q9GZS3 305 aaKnown RBP11.28□□□□□ -0.6
SDC3-201ENST00000336798 TRAV17A0A0B4J275 112 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 A0A1B0GTH9 108 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 THBS4P35443 961 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 G6PCP35575 357 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 CEBPDP49716 269 aaPredicted RBP11.28□□□□□ -0.6
SDC3-201ENST00000336798 C6orf201Q7Z4U5 140 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 ZNF429Q86V71 674 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 IL36GQ9NZH8 169 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 PCDHGA9Q9Y5G4 932 aaKnown RBP11.28□□□□□ -0.6
SDC3-201ENST00000336798 AUP1Q9Y679 476 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 UBR2Q8IWV8 1755 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 ST8SIA5O15466 376 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 GALNSP34059 522 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 VN1R1Q9GZP7 353 aa11.28□□□□□ -0.6
SDC3-201ENST00000336798 A0A1B0GTL3 188 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 K7ESF4 209 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 CSN3P07498 182 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 CELA2BP08218 269 aaPredicted RBP11.27□□□□□ -0.6
SDC3-201ENST00000336798 SFTA3P0C7M3 94 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 SOX8P57073 446 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 WDR74Q6RFH5 385 aaPredicted RBP11.27□□□□□ -0.6
SDC3-201ENST00000336798 KLHDC1Q8N7A1 406 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 ZNF485Q8NCK3 441 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 SERGEFQ9UGK8 458 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 WASHC3Q9Y3C0 194 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 OTUD1Q5VV17 481 aaPredicted RBP11.27□□□□□ -0.6
SDC3-201ENST00000336798 BAP18Q8IXM2 172 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 OR5D13Q8NGL4 314 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 TEX101Q9BY14 249 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 NAT8BQ9UHF3 227 aa11.27□□□□□ -0.6
SDC3-201ENST00000336798 A0A0A6YYD5 115 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 TCRBV5S1A1TA0A578 114 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 TMPRSS2O15393 492 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 CD1BP29016 333 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 CAMPP49913 170 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 GNG3P63215 75 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 HYAL1Q12794 435 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 PABPC1L2AQ5JQF8 200 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 FAM162BQ5T6X4 162 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 OR2M3Q8NG83 312 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 MPZL1O95297 269 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 ACTL6AO96019 429 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 JUNBP17275 347 aaPredicted RBP11.27□□□□□ -0.61
SDC3-201ENST00000336798 YBX1P67809 324 aaKnown RBP11.27□□□□□ -0.61
SDC3-201ENST00000336798 FAM53BQ14153 422 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 MIDNQ504T8 468 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 RNFT1Q5M7Z0 435 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 MVB12AQ96EY5 273 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 LMO7DNF2Z398 122 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 TOX3O15405 576 aaPredicted RBP11.27□□□□□ -0.61
SDC3-201ENST00000336798 SMIM6P0DI80 62 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 FUT3P21217 361 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 ANKRD37Q7Z713 158 aa11.27□□□□□ -0.61
SDC3-201ENST00000336798 ARL6IP6Q8N6S5 226 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms