RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CES1P1Q9UKY3 287 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 NEUROG3Q9Y4Z2 214 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 PMP22Q01453 160 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 GUSBP11Q6P575 273 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 SCN2AQ99250 2005 aa13.67□□□□□ -0.22
SHH-201ENST00000297261 OR2J2O76002 312 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 RCC1P18754 421 aaPredicted RBP13.66□□□□□ -0.22
SHH-201ENST00000297261 KITLGP21583 273 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 FOLR3P41439 243 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 ENDOGQ14249 297 aaKnown RBP13.66□□□□□ -0.22
SHH-201ENST00000297261 AAED1Q7RTV5 226 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 TMEM52Q8NDY8 209 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 OR51I2Q9H344 312 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 PISDQ9UG56 409 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 V9GYS6 101 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 FAM24AA6NFZ4 105 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 M0R135 149 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 WDR1O75083 606 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 HLA-DOBP13765 273 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 EDN3P14138 238 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 SSTP61278 116 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 MOGAT2Q3SYC2 334 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 MISPQ8IVT2 679 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 IL22RA1Q8N6P7 574 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 OR1L3Q8NH93 324 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 ZNF799Q96GE5 643 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 KCNMB2Q9Y691 235 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 GJE1A6NN92 205 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 FTCDNL1E5RQL4 147 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 HMGB3O15347 200 aaKnown RBP13.66□□□□□ -0.22
SHH-201ENST00000297261 RAB4AP20338 218 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 HNF1AP20823 631 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 BRICD5Q6PL45 260 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 C20orf196Q8IYI0 205 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 OR2I1PQ8NGU4 316 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 SNX22Q96L94 193 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 ZNF320A2RRD8 509 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 TCAPO15273 167 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 ZNF345Q14585 488 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 OR8U1Q8NH10 309 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 BTF3L4Q96K17 158 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 SLCO1B1Q9Y6L6 691 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 ABCA7Q8IZY2 2146 aa13.66□□□□□ -0.22
SHH-201ENST00000297261 MGST1P10620 155 aaKnown RBP13.65□□□□□ -0.22
SHH-201ENST00000297261 NTF3P20783 257 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 SNCAP37840 140 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 NOVA1P51513 510 aaKnown RBP13.65□□□□□ -0.22
SHH-201ENST00000297261 CCL7P80098 99 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 ZNF658BQ4V348 819 aaPredicted RBP13.65□□□□□ -0.22
SHH-201ENST00000297261 BORCS7Q96B45 105 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 MENTQ9BUN1 341 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 VSIG4Q9Y279 399 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 LIPGQ9Y5X9 500 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 SERPINE3A8MV23 424 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 CYR61O00622 381 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 ZNF205O95201 554 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 REEP6Q96HR9 211 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 UHRF2Q96PU4 802 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 ALX4Q9H161 411 aaPredicted RBP13.65□□□□□ -0.22
SHH-201ENST00000297261 MOB1AQ9H8S9 216 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 CEP250Q9BV73 2442 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 MFNGO00587 321 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 PIN1P1O15428 100 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 C6orf201Q7Z4U5 140 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 OR5C1Q8NGR4 320 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 RDH5Q92781 318 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 PRSS27Q9BQR3 290 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 FAM103A1Q9BTL3 118 aaKnown RBP13.65□□□□□ -0.22
SHH-201ENST00000297261 SARGQ9BW04 601 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 ZMIZ1Q9ULJ6 1067 aa13.65□□□□□ -0.22
SHH-201ENST00000297261 IGHV3-9P01782 118 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 FUT5Q11128 374 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 PNLIPRP3Q17RR3 467 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 Q3ZCU0 254 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 TSPO2Q5TGU0 170 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 LSRQ86X29 649 aaPredicted RBP13.64□□□□□ -0.23
SHH-201ENST00000297261 C8orf44Q96CB5 159 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 NPDC1Q9NQX5 325 aaPredicted RBP13.64□□□□□ -0.23
SHH-201ENST00000297261 SOCS1O15524 211 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 SPRY1O43609 319 aaPredicted RBP13.64□□□□□ -0.23
SHH-201ENST00000297261 OR2B11Q5JQS5 317 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 TFAP2EQ6VUC0 442 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 KMT5CQ86Y97 462 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 ZNF275Q9NSD4 429 aaPredicted RBP13.64□□□□□ -0.23
SHH-201ENST00000297261 OR2A4O95047 310 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 MMP7P09237 267 aaPredicted RBP13.64□□□□□ -0.23
SHH-201ENST00000297261 RPS4XP62701 263 aaKnown RBP13.64□□□□□ -0.23
SHH-201ENST00000297261 TMEM255AQ5JRV8 349 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 CCDC74BQ96LY2 380 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 OR2A7Q96R45 310 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 VPS25Q9BRG1 176 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 PILRAQ9UKJ1 303 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 A8MXK9 166 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 HS3ST1O14792 307 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 ABHD16AO95870 558 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 APOBEC1P41238 236 aaKnown RBP13.64□□□□□ -0.23
SHH-201ENST00000297261 PCBD1P61457 104 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 THEM4Q5T1C6 240 aa13.64□□□□□ -0.23
SHH-201ENST00000297261 FAHD2BQ6P2I3 314 aaPredicted RBP13.64□□□□□ -0.23
SHH-201ENST00000297261 FAM58AQ8N1B3 248 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms