RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 UBAP1Q9NZ09 502 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 ERVK-18Q9QC07 812 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 RNF7Q9UBF6 113 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 PCDHGB5Q9Y5G0 923 aa15.22■□□□□ 0.03
CLN3-243ENST00000635973 ZNF732B4DXR9 585 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 HAX1O00165 279 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 WNT9BO14905 357 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 DENRO43583 198 aaKnown RBP15.21■□□□□ 0.03
CLN3-243ENST00000635973 ZNF205O95201 554 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 OCM2P0CE71 109 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 OCMP0CE72 109 aaPredicted RBP15.21■□□□□ 0.03
CLN3-243ENST00000635973 TMEM42Q69YG0 159 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 ZNF826PQ6ZT77 177 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 SPICQ8N5J4 248 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 NANOGP1Q8N7R0 232 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 ZFP41Q8N8Y5 198 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 OR5A2Q8NGI9 324 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 OR51A4Q8NGJ6 313 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 OR10AC1Q8NH08 325 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 SGCDQ92629 289 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 RAB39BQ96DA2 213 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 SMIM19Q96E16 107 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 CHST5Q9GZS9 411 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 SLC7A11Q9UPY5 501 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 DHDHQ9UQ10 334 aa15.21■□□□□ 0.03
CLN3-243ENST00000635973 PNMA8CA0A1B0GUJ8 204 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 FAM157AC9JC47 383 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 CDIPTO14735 213 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 LALBAP00709 142 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 IGHV2-70P01814 119 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 MDH2P40926 338 aaKnown RBP15.2■□□□□ 0.02
CLN3-243ENST00000635973 ZMYND11Q15326 602 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 CNN3Q15417 329 aaKnown RBP15.2■□□□□ 0.02
CLN3-243ENST00000635973 FAHD2BQ6P2I3 314 aaPredicted RBP15.2■□□□□ 0.02
CLN3-243ENST00000635973 KRT74Q7RTS7 529 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 MUC20Q8N307 709 aaPredicted RBP15.2■□□□□ 0.02
CLN3-243ENST00000635973 TRMT10AQ8TBZ6 339 aaKnown RBP15.2■□□□□ 0.02
CLN3-243ENST00000635973 NPRL2Q8WTW4 380 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 PP6455Q8WZ26 134 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 RPL3LQ92901 407 aaKnown RBP15.2■□□□□ 0.02
CLN3-243ENST00000635973 FGGYQ96C11 551 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 FAHD2AQ96GK7 314 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 TECTBQ96PL2 329 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 CDCA4Q9BXL8 241 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 FGF23Q9GZV9 251 aaPredicted RBP15.2■□□□□ 0.02
CLN3-243ENST00000635973 DUSP21Q9H596 190 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 METTL17Q9H7H0 456 aaPredicted RBP15.2■□□□□ 0.02
CLN3-243ENST00000635973 PCDHB10Q9UN67 800 aa15.2■□□□□ 0.02
CLN3-243ENST00000635973 SVEP1Q4LDE5 3571 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 PPIAL4EA0A075B759 164 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 TRAV20A0A0B4J274 112 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 PPIAL4DF5H284 164 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 MT-ND2P03891 347 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 PPIAL4FP0DN26 164 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 RNLSQ5VYX0 342 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 TEX29Q8N6K0 151 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 SCCPDHQ8NBX0 429 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 GPR148Q8TDV2 347 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 LRRC29Q8WV35 223 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 ADAT3Q96EY9 351 aaPredicted RBP15.19■□□□□ 0.02
CLN3-243ENST00000635973 ZNF665Q9H7R5 613 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 ZNF281Q9Y2X9 895 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 PPIAL4AQ9Y536 164 aa15.19■□□□□ 0.02
CLN3-243ENST00000635973 FAM230AA0A1W2PPH8 454 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 OGG1O15527 345 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 CD80P33681 288 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 SOX2P48431 317 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 LMO4P61968 165 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 MED22Q15528 200 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 TMEM155Q4W5P6 130 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 FAM201AQ5SY85 155 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 HAGHLQ6PII5 290 aaPredicted RBP15.18■□□□□ 0.02
CLN3-243ENST00000635973 WDR82Q6UXN9 313 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 PRSS48Q7RTY5 328 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 ZNF573Q86YE8 665 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 ZNF485Q8NCK3 441 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 TLNRD1Q9H1K6 362 aa15.18■□□□□ 0.02
CLN3-243ENST00000635973 SIRT4Q9Y6E7 314 aaPredicted RBP15.18■□□□□ 0.02
CLN3-243ENST00000635973 C3orf80F5H4A9 247 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 CD2P06729 351 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 CELP19835 753 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 HAAOP46952 286 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 GMFBP60983 142 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 SPHARQ15513 63 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 KCNJ8Q15842 424 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 DMKNQ6E0U4 476 aaPredicted RBP15.17■□□□□ 0.02
CLN3-243ENST00000635973 SFRP4Q6FHJ7 346 aaPredicted RBP15.17■□□□□ 0.02
CLN3-243ENST00000635973 LRRC28Q86X40 367 aaPredicted RBP15.17■□□□□ 0.02
CLN3-243ENST00000635973 C11orf53Q8IXP5 236 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 C19orf18Q8NEA5 215 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 DEFB108BQ8NET1 73 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 RPS4Y2Q8TD47 263 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 GHSRQ92847 366 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 BORCS8Q96FH0 119 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 OR51I2Q9H344 312 aa15.17■□□□□ 0.02
CLN3-243ENST00000635973 TRAV38-1A0A0B4J264 116 aa15.16■□□□□ 0.02
CLN3-243ENST00000635973 PQLC2LA1A4F0 135 aa15.16■□□□□ 0.02
CLN3-243ENST00000635973 OOEPA6NGQ2 149 aa15.16■□□□□ 0.02
CLN3-243ENST00000635973 LGALS8O00214 317 aa15.16■□□□□ 0.02
CLN3-243ENST00000635973 IGHV2-5P01817 119 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms