RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SHOXO15266 292 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 HLA-HP01893 362 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 CHRM2P08172 466 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 PPP3CBP16298 524 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 CAPZA1P52907 286 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 SEC61A1P61619 476 aaKnown RBP9.25□□□□□ -0.93
CUX1-221ENST00000622516 IL13RA1P78552 427 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 ZNF92Q03936 586 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 RAB35Q15286 201 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 BEX5Q5H9J7 111 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 ABLIM2Q6H8Q1 611 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 VASH2Q86V25 355 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 CPT1CQ8TCG5 803 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 ADAMTS17Q8TE56 1095 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 CCDC107Q8WV48 283 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 CPNE4Q96A23 557 aaPredicted RBP9.25□□□□□ -0.93
CUX1-221ENST00000622516 PRRT1Q99946 306 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 GPR87Q9BY21 358 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 PRRG4Q9BZD6 226 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 OR2H1Q9GZK4 316 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 ARL6Q9H0F7 186 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 WNT5BQ9H1J7 359 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 DEFB127Q9H1M4 99 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 DMXL2Q8TDJ6 3036 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 ARGFXA6NJG6 315 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 TERTO14746 1132 aaKnown RBP9.25□□□□□ -0.93
CUX1-221ENST00000622516 CYTIPO60759 359 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 PRF1P14222 555 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 CD34P28906 385 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 THBS4P35443 961 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 CLDN18P56856 261 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 RPS27AP62979 156 aaKnown RBP9.25□□□□□ -0.93
CUX1-221ENST00000622516 MEF2DQ14814 521 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 TAF9Q16594 264 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 PABPC1L2AQ5JQF8 200 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 DYRK2Q92630 601 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 HAS2Q92819 552 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 URM1Q9BTM9 101 aaKnown RBP9.25□□□□□ -0.93
CUX1-221ENST00000622516 PDCD10Q9BUL8 212 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 ZNF701Q9NV72 531 aaPredicted RBP9.25□□□□□ -0.93
CUX1-221ENST00000622516 LIPGQ9Y5X9 500 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 SMG1Q96Q15 3661 aaKnown RBP9.25□□□□□ -0.93
CUX1-221ENST00000622516 SHANK1Q9Y566 2161 aa9.25□□□□□ -0.93
CUX1-221ENST00000622516 IGKV1D-8A0A087WSZ0 117 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 ZNF503-AS2A6NEH8 195 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 CST2P09228 141 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 RELQ04864 619 aaPredicted RBP9.24□□□□□ -0.93
CUX1-221ENST00000622516 ALKAL2Q6UX46 152 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 OR56B1Q8NGI3 324 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 OR52H1Q8NGJ2 320 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 C1QTNF6Q9BXI9 259 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 TIMM10BQ9Y5J6 103 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 FAM221AA4D161 298 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 MFNGO00587 321 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 DNPH1O43598 174 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 HPNP05981 417 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 RRADP55042 308 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 ARF1P84077 181 aaKnown RBP9.24□□□□□ -0.93
CUX1-221ENST00000622516 SCRN3Q0VDG4 424 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 TRIP6Q15654 476 aaKnown RBP9.24□□□□□ -0.93
CUX1-221ENST00000622516 DRAM2Q6UX65 266 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 OR2W3Q7Z3T1 314 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.24□□□□□ -0.93
CUX1-221ENST00000622516 PP6455Q8WZ26 134 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 PIGCQ92535 297 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 USB1Q9BQ65 265 aaKnown RBP9.24□□□□□ -0.93
CUX1-221ENST00000622516 ALX4Q9H161 411 aaPredicted RBP9.24□□□□□ -0.93
CUX1-221ENST00000622516 OR51B6Q9H340 312 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 C12orf49Q9H741 205 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 NUP50Q9UKX7 468 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 C13orf42A0A1B0GVH6 325 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 SPAARA0A1B0GVQ0 90 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 LEUTXA8MZ59 168 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 C21orf140B9A014 251 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 EEF1E1-BLOC1S5C9J1V9 151 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 AMY2BP19961 511 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 SNU13P55769 128 aaKnown RBP9.24□□□□□ -0.93
CUX1-221ENST00000622516 RIPPLY1Q0D2K3 151 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 LOXL4Q96JB6 756 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 PLEKHJ1Q9NW61 149 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 FBLN5Q9UBX5 448 aa9.24□□□□□ -0.93
CUX1-221ENST00000622516 MCTS1Q9ULC4 181 aaKnown RBP9.24□□□□□ -0.93
CUX1-221ENST00000622516 TRAV14DV4A0A0A6YYC5 116 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 C9orf170A2RU37 121 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 OR6C6A6NF89 314 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 ATP6V1G2-DDX39BF2Z307 99 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 ZNF806P0C7X5 589 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 ATF4P18848 351 aaPredicted RBP9.23□□□□□ -0.93
CUX1-221ENST00000622516 ZBTB25P24278 435 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 MEOX1P50221 254 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 GK2Q14410 553 aaPredicted RBP9.23□□□□□ -0.93
CUX1-221ENST00000622516 SLC9A3R2Q15599 337 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 TMUB2Q71RG4 321 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 CDH26Q8IXH8 852 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 CSNK2A3Q8NEV1 391 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 FAAP24Q9BTP7 215 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 PECRQ9BY49 303 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 B4GALT7Q9UBV7 327 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 ZNF629Q9UEG4 869 aaPredicted RBP9.23□□□□□ -0.93
CUX1-221ENST00000622516 UBQLN2Q9UHD9 624 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 116.6 ms