RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 OR52N4Q8NGI2 321 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 OR5D14Q8NGL3 314 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 KCNG3Q8TAE7 436 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 FAM213BQ8TBF2 198 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 ERGIC1Q969X5 290 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 ACTR3CQ9C0K3 210 aaPredicted RBP9.56□□□□□ -0.88
UPF3A-212ENST00000619079 LPAR5Q9H1C0 372 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 LRIT1Q9P2V4 623 aa9.56□□□□□ -0.88
UPF3A-212ENST00000619079 IGHV1OR15-9A0A0B4J2B8 117 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 K7N7A8 449 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 MASP2O00187 686 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 SEMA4FO95754 770 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 HCKP08631 526 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 GLRA1P23415 457 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 CCR4P51679 360 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 ERVFRD-1P60508 538 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 RPL27P61353 136 aaKnown RBP9.55□□□□□ -0.88
UPF3A-212ENST00000619079 DLK1P80370 383 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 H3F3AP84243 136 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 TNFRSF9Q07011 255 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 AGBL4Q5VU57 503 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 C1orf140Q5VVS0 124 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 COX15Q7KZN9 410 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 WDR5BQ86VZ2 330 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 CA13Q8N1Q1 262 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 OR2I1PQ8NGU4 316 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 FGGYQ96C11 551 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 RCC1LQ96I51 464 aaKnown RBP9.55□□□□□ -0.88
UPF3A-212ENST00000619079 MBNL1Q9NR56 388 aaKnown RBP9.55□□□□□ -0.88
UPF3A-212ENST00000619079 KIAA1456Q9P272 454 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 SLC17A4Q9Y2C5 497 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 TGIF2-C20orf24A0A0A6YYL0 155 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 ZNF727A8MUV8 499 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 FTCDNL1E5RQL4 147 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 HSD17B6O14756 317 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 PHOX2AO14813 284 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 PPP1CCP36873 323 aaKnown RBP9.55□□□□□ -0.88
UPF3A-212ENST00000619079 RAB38P57729 211 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 ARFRP1Q13795 201 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 ZNF343Q6P1L6 599 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 NPSR1Q6W5P4 371 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 ZNF429Q86V71 674 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 C9orf40Q8IXQ3 194 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 TMEM156Q8N614 296 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 BCORP1Q8N888 145 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 HSD17B11Q8NBQ5 300 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 APCDD1LQ8NCL9 501 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 MVB12AQ96EY5 273 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 FAM210BQ96KR6 192 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 ZFYVE21Q9BQ24 234 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 SMOC1Q9H4F8 434 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 CRLF2Q9HC73 371 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 EHFQ9NZC4 300 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 URGCP-MRPS24S4R325 110 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 FANCMQ8IYD8 2048 aa9.55□□□□□ -0.88
UPF3A-212ENST00000619079 CCDC187A0A096LP49 1063 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 MT-ATP6P00846 226 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 KNG1P01042 644 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 CRYABP02511 175 aaKnown RBP9.54□□□□□ -0.88
UPF3A-212ENST00000619079 HSPB1P04792 205 aaKnown RBP9.54□□□□□ -0.88
UPF3A-212ENST00000619079 TDGF1P13385 188 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 ZNF823P16415 610 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 ZNF93P35789 620 aaPredicted RBP9.54□□□□□ -0.88
UPF3A-212ENST00000619079 MMP16P51512 607 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 CSNK2A1P68400 391 aaPredicted RBP9.54□□□□□ -0.88
UPF3A-212ENST00000619079 SLC10A1Q14973 349 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 C1QL3Q5VWW1 255 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 DGAT2L6Q6ZPD8 337 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 MARCH3Q86UD3 253 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 TMEM183AQ8IXX5 376 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 TMEFF1Q8IYR6 380 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 CSNK2A3Q8NEV1 391 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 ZNF519Q8TB69 540 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 TAAR8Q969N4 342 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 R3HDM4Q96D70 268 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 URM1Q9BTM9 101 aaKnown RBP9.54□□□□□ -0.88
UPF3A-212ENST00000619079 DDA1Q9BW61 102 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 TMEM242Q9NWH2 141 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 DKKL1Q9UK85 242 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 HS3ST3B1Q9Y662 390 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 CACNA1CQ13936 2221 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 FAM221BA6H8Z2 402 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 CDRT15L2A8MXV6 281 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 P2RY10O00398 339 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 PLRG1O43660 514 aaKnown RBP9.54□□□□□ -0.88
UPF3A-212ENST00000619079 CYTIPO60759 359 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 C1QL1O75973 258 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 DFFBO76075 338 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 SCGB1D2O95969 90 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 GCGP01275 180 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 CEACAM5P06731 702 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 BCKDHBP21953 392 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 AKT2P31751 481 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 PTGER4P35408 488 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 APOBEC1P41238 236 aaKnown RBP9.54□□□□□ -0.88
UPF3A-212ENST00000619079 INSM1Q01101 510 aaPredicted RBP9.54□□□□□ -0.88
UPF3A-212ENST00000619079 SQSTM1Q13501 440 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 IL13RA2Q14627 380 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 ACKR1Q16570 336 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms