RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CHODLQ9H9P2 273 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 FN3KRPQ9HA64 309 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 NOX4Q9NPH5 578 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 DCAF16Q9NXF7 216 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 SLC7A11Q9UPY5 501 aa16.63■□□□□ 0.25
UPF3A-211ENST00000618700 IGKV1-27A0A075B6S5 117 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 TRAV8-7A0A075B6U6 113 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 IFNL4K9M1U5 179 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 UCHL1P09936 223 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 GALP22466 123 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 AZGP1P25311 298 aaKnown RBP16.62■□□□□ 0.25
UPF3A-211ENST00000618700 TGFBR2P37173 567 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 PDLIM4P50479 330 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 FABP5Q01469 135 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 RIN1Q13671 783 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 HFEQ30201 348 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 FAM27D1Q5T7N8 215 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 SHEQ5VZ18 495 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 CLEC2AQ6UVW9 174 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 OR51A2Q8NGJ7 313 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 ZNF420Q8TAQ5 688 aaPredicted RBP16.62■□□□□ 0.25
UPF3A-211ENST00000618700 TRMT10AQ8TBZ6 339 aaKnown RBP16.62■□□□□ 0.25
UPF3A-211ENST00000618700 TMEM106BQ9NUM4 274 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 UFSP2Q9NUQ7 469 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 TREM2Q9NZC2 230 aa16.62■□□□□ 0.25
UPF3A-211ENST00000618700 A0A1W2PPK0 400 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 A6NLC8 198 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 GABRPO00591 440 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 LCE2BO14633 110 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 RAB3AP20336 220 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 GIFP27352 417 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 RBMXP38159 391 aaKnown RBP16.61■□□□□ 0.25
UPF3A-211ENST00000618700 CLEC12BQ2HXU8 276 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 CRIP3Q6Q6R5 217 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 CEACAM19Q7Z692 300 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 C10orf105Q8TEF2 133 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 PHYHIPQ92561 330 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 CCL17Q92583 94 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 RPL3LQ92901 407 aaKnown RBP16.61■□□□□ 0.25
UPF3A-211ENST00000618700 BORCS8Q96FH0 119 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 PPIL3Q9H2H8 161 aaKnown RBP16.61■□□□□ 0.25
UPF3A-211ENST00000618700 C1orf123Q9NWV4 160 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 CKLFQ9UBR5 152 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 FOXJ3Q9UPW0 622 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 DYSFO75923 2080 aa16.61■□□□□ 0.25
UPF3A-211ENST00000618700 FAM230AA0A1W2PPH8 454 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 NDUFS8O00217 210 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 MPZP25189 248 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 CFHR2P36980 270 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 DSCR9P59020 149 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 PPP3R1P63098 170 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 WDR82Q6UXN9 313 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 ZNF826PQ6ZT77 177 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 LHFPL2Q6ZUX7 228 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 ZNF573Q86YE8 665 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 SCCPDHQ8NBX0 429 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 FAM168AQ92567 244 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 HPS1Q92902 700 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 NEK6Q9HC98 313 aa16.6■□□□□ 0.25
UPF3A-211ENST00000618700 TRDV1A0A1B0GX56 115 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 VWC2LB2RUY7 222 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 CLDN25C9JDP6 229 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 TMEM178BH3BS89 294 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 J3QT63 122 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 CDIPTO14735 213 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 HAAOP46952 286 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 RBP2P50120 134 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 TMEM33P57088 247 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 CARTPTQ16568 116 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 HAGHLQ6PII5 290 aaPredicted RBP16.59■□□□□ 0.25
UPF3A-211ENST00000618700 RNF144BQ7Z419 303 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 CALHM1Q8IU99 346 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 OR11L1Q8NGX0 322 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 AQP3Q92482 292 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 TMEM138Q9NPI0 162 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 ITGB1BP2Q9UKP3 347 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 STUB1Q9UNE7 303 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 CREBBPQ92793 2442 aa16.59■□□□□ 0.25
UPF3A-211ENST00000618700 IGHV4-30-2A0A087WSY4 118 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 TRIM64BA6NI03 449 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 LRRC30A6NM36 301 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 CYB5R3P00387 301 aaPredicted RBP16.58■□□□□ 0.24
UPF3A-211ENST00000618700 ALDOBP05062 364 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 TFAP2AP05549 437 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 HCKP08631 526 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 CD36P16671 472 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 BDKRB2P30411 391 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 ALDH3B2P48448 385 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 ATP1B3P54709 279 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 HSD17B12Q53GQ0 312 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 ANGPTL5Q86XS5 388 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 GCSAMQ8N6F7 178 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 WFDC11Q8NEX6 87 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 OR10Z1Q8NGY1 313 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 YIPF6Q96EC8 236 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 SPACA5Q96QH8 159 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 PIMREGQ9BSJ6 248 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 PKIBQ9C010 78 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 RNF7Q9UBF6 113 aa16.58■□□□□ 0.24
UPF3A-211ENST00000618700 ITPR3Q14573 2671 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms