RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, human

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TUBE1-208	ENST00000604743	ZNF671	Q8TAW3	534 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	TRMT10A	Q8TBZ6	339 aa	Known RBP	11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	NPRL2	Q8WTW4	380 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	CYGB	Q8WWM9	190 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	ITFG2	Q969R8	447 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	MYRF	Q9Y2G1	1151 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	DNHD1	Q96M86	4753 aa		11.97	□□□□□ -0.49
TUBE1-208	ENST00000604743	LOC107986453	A0A1B0GWG9	222 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	FAM230A	A0A1W2PPH8	454 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	DLGAP1	O14490	977 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	ENSA	O43768	121 aa	Known RBP	11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	FCN3	O75636	299 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	FSHB	P01225	129 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	HTR1A	P08908	422 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	CCL1	P22362	96 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	FPR2	P25090	351 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	PEX2	P28328	305 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	HAAO	P46952	286 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	GABRA2	P47869	451 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	FGF12	P61328	243 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	ISL1	P61371	349 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	SMN1	Q16637	294 aa	Known RBP	11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	KLF17	Q5JT82	389 aa	Predicted RBP	11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	TMEM42	Q69YG0	159 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	BTN2A1	Q7KYR7	527 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	SLC36A1	Q7Z2H8	476 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	OR2G2	Q8NGZ5	317 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	APH1B	Q8WW43	257 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	AQP3	Q92482	292 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	DACT3	Q96B18	629 aa	Predicted RBP	11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	TMIGD2	Q96BF3	282 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	C4orf36	Q96KX1	117 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	ZNF488	Q96MN9	340 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	RDH12	Q96NR8	316 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	PCGF1	Q9BSM1	259 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	ALG8	Q9BVK2	526 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	C19orf24	Q9BVV8	132 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	NLK	Q9UBE8	527 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	KAAG1	Q9UBP8	84 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	ZNF69	Q9UC07	566 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	NUP50	Q9UKX7	468 aa		11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	RPL36	Q9Y3U8	105 aa	Known RBP	11.96	□□□□□ -0.49
TUBE1-208	ENST00000604743	TRAV40	A0A0B4J280	105 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	ANKRD61	A6NGH8	418 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	NKX6-3	A6NJ46	265 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	NDUFB3	O43676	98 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	SYNGR1	O43759	233 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	FADS2	O95864	444 aa	Known RBP	11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	UBC	P0CG48	685 aa	Known RBP	11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	IGHV4-38-2	P0DP08	117 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	SELL	P14151	372 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	AMY2B	P19961	511 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	NANOS3	P60323	173 aa	Known RBP	11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	STUM	Q69YW2	141 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	KCTD20	Q7Z5Y7	419 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	ZNF573	Q86YE8	665 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	BCL6B	Q8N143	479 aa	Predicted RBP	11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	CNIH3	Q8TBE1	160 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	RNF166	Q96A37	237 aa	Predicted RBP	11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	C12orf43	Q96C57	262 aa	Known RBP	11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	MRPL48	Q96GC5	212 aa	Known RBP	11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	SUCNR1	Q9BXA5	334 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	MS4A7	Q9GZW8	240 aa	Predicted RBP	11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	ISG20L2	Q9H9L3	353 aa	Known RBP	11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743	FRRS1L	Q9P0K9	344 aa		11.95	□□□□□ -0.5
TUBE1-208	ENST00000604743		A0A0A6YYJ9	748 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	PQLC2L	A1A4F0	135 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	OR2AT4	A6NND4	320 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	DHRS7C	A6NNS2	312 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	INMT	O95050	263 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	ACTA2	P62736	377 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	ACTG2	P63267	376 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	RAB40B	Q12829	278 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	GALE	Q14376	348 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	LRRC10	Q5BKY1	277 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	ZNF691	Q5VV52	312 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	TMEM244	Q5VVB8	128 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743		Q6ZSR3	168 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	ANGPTL5	Q86XS5	388 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	PNLDC1	Q8NA58	520 aa	Known RBP	11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	OR52I1	Q8NGK6	324 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	SPATA3	Q8NHX4	192 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	H1FX	Q92522	213 aa	Known RBP	11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	UPRT	Q96BW1	309 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	PELI1	Q96FA3	418 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	GAFA1	Q96PS6	74 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	ERVK13-1	Q9NX77	482 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	SLC7A11	Q9UPY5	501 aa		11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	SOX21	Q9Y651	276 aa	Predicted RBP	11.94	□□□□□ -0.5
TUBE1-208	ENST00000604743	ZNF879	B4DU55	563 aa		11.93	□□□□□ -0.5
TUBE1-208	ENST00000604743		J3QT63	122 aa		11.93	□□□□□ -0.5
TUBE1-208	ENST00000604743	WBP4	O75554	376 aa	Known RBP	11.93	□□□□□ -0.5
TUBE1-208	ENST00000604743	GATB	O75879	557 aa	Known RBP	11.93	□□□□□ -0.5
TUBE1-208	ENST00000604743	TOX4	O94842	621 aa		11.93	□□□□□ -0.5
TUBE1-208	ENST00000604743	ECD	O95905	644 aa	Predicted RBP	11.93	□□□□□ -0.5
TUBE1-208	ENST00000604743	PLAT	P00750	562 aa		11.93	□□□□□ -0.5
TUBE1-208	ENST00000604743	SERPINA3	P01011	423 aa		11.93	□□□□□ -0.5
TUBE1-208	ENST00000604743	SFTPB	P07988	381 aa		11.93	□□□□□ -0.5
TUBE1-208	ENST00000604743	TGM4	P49221	684 aa		11.93	□□□□□ -0.5
TUBE1-208	ENST00000604743	ARF6	P62330	175 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms