RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 NKX3-1Q99801 234 aaPredicted RBP13.17□□□□□ -0.3
UPF1-206ENST00000598471 SPOCK3Q9BQ16 436 aa13.17□□□□□ -0.3
UPF1-206ENST00000598471 CST11Q9H112 138 aa13.17□□□□□ -0.3
UPF1-206ENST00000598471 ELL3Q9HB65 397 aaPredicted RBP13.17□□□□□ -0.3
UPF1-206ENST00000598471 MSL2Q9HCI7 577 aa13.17□□□□□ -0.3
UPF1-206ENST00000598471 PCDHB16Q9NRJ7 776 aa13.17□□□□□ -0.3
UPF1-206ENST00000598471 MYEF2Q9P2K5 600 aaKnown RBP13.17□□□□□ -0.3
UPF1-206ENST00000598471 OR5V1Q9UGF6 321 aa13.17□□□□□ -0.3
UPF1-206ENST00000598471 ZDHHC8Q9ULC8 765 aa13.17□□□□□ -0.3
UPF1-206ENST00000598471 IGKV1-27A0A075B6S5 117 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 A1L4Q6 167 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 LRP5LA4QPB2 252 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 B9A039 149 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 M0R233 179 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 MLNRO43193 412 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 HPGDSO60760 199 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 ZNF780AO75290 641 aaPredicted RBP13.16□□□□□ -0.3
UPF1-206ENST00000598471 CLDN1O95832 211 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 PLAUP00749 431 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 APOA1P02647 267 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 NAT2P11245 290 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 TALDO1P37837 337 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 ALDH3B1P43353 468 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 HAAOP46952 286 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 ZP1P60852 638 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 GPR176Q14439 515 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 RSU1Q15404 277 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 FAM189A2Q15884 450 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 C2orf76Q3KRA6 126 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 SPANXN2Q5MJ10 180 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 Q6ZR03 302 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 OR2W3Q7Z3T1 314 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 LAX1Q8IWV1 398 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 MKXQ8IYA7 352 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 SAXO1Q8IYX7 474 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 ACBD4Q8NC06 268 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 PXT1Q8NFP0 134 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 OR2Z1Q8NG97 314 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 NEUROG1Q92886 237 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 FBXW5Q969U6 566 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 PTX4Q96A99 478 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 ELMOD3Q96FG2 381 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 PKIBQ9C010 78 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 METTL9Q9H1A3 318 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 DYNLRB1Q9NP97 96 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 FAIMQ9NVQ4 179 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 FBXO9Q9UK97 447 aaPredicted RBP13.16□□□□□ -0.3
UPF1-206ENST00000598471 ING4Q9UNL4 249 aa13.16□□□□□ -0.3
UPF1-206ENST00000598471 ZSCAN5BA6NJL1 495 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 A6NNC1 897 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 H0YL77 283 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 J3QT63 122 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 KDM4BO94953 1096 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 PLATP00750 562 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 RAB6AP20340 208 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 CD200P41217 278 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 SRP9P49458 86 aaKnown RBP13.15□□□□□ -0.3
UPF1-206ENST00000598471 ART1P52961 327 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 SNRPD2P62316 118 aaKnown RBP13.15□□□□□ -0.3
UPF1-206ENST00000598471 PDZK1IP1Q13113 114 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 SLC25A26Q70HW3 274 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 ZNF611Q8N823 705 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 OR5H6Q8NGV6 325 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 KCNG3Q8TAE7 436 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 RAB40AQ8WXH6 277 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 FGF23Q9GZV9 251 aaPredicted RBP13.15□□□□□ -0.3
UPF1-206ENST00000598471 MIXL1Q9H2W2 232 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 HMG20AQ9NP66 347 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 RHBDL2Q9NX52 303 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 FBLN5Q9UBX5 448 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 RAB22AQ9UL26 194 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 POLDIP2Q9Y2S7 368 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 DOPEY1Q5JWR5 2465 aa13.15□□□□□ -0.3
UPF1-206ENST00000598471 CADP27708 2225 aa13.15□□□□□ -0.31
UPF1-206ENST00000598471 UBR5O95071 2799 aaPredicted RBP13.15□□□□□ -0.31
UPF1-206ENST00000598471 SPTBN1Q01082 2364 aaKnown RBP13.14□□□□□ -0.31
UPF1-206ENST00000598471 MYO18BQ8IUG5 2567 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 TMEM272A0A1B0GTI8 110 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 F5H5P2 479 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 SPRY1O43609 319 aaPredicted RBP13.14□□□□□ -0.31
UPF1-206ENST00000598471 SPRY3O43610 288 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 CSTBP04080 98 aaKnown RBP13.14□□□□□ -0.31
UPF1-206ENST00000598471 TNFSF8P32971 234 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 IL24Q13007 206 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 SLC22A6Q4U2R8 563 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 FAM76BQ5HYJ3 339 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 HAGHLQ6PII5 290 aaPredicted RBP13.14□□□□□ -0.31
UPF1-206ENST00000598471 CRIP3Q6Q6R5 217 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 RNF144BQ7Z419 303 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 TMEM200AQ86VY9 491 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 MUC15Q8N387 334 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 CELF2-AS1Q8N7Q2 184 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 OR51F2Q8NH61 342 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 PHF21AQ96BD5 680 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 DIRAS2Q96HU8 199 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 OR51I2Q9H344 312 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 MS4A5Q9H3V2 200 aa13.14□□□□□ -0.31
UPF1-206ENST00000598471 TENM4Q6N022 2769 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 METTL21EPA6NDL7 271 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 A6NLC8 198 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms