RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SAMD12Q8N8I0 201 aa12.48□□□□□ -0.41
VRK3-212ENST00000596814 OR2Z1Q8NG97 314 aa12.48□□□□□ -0.41
VRK3-212ENST00000596814 OR5H6Q8NGV6 325 aa12.48□□□□□ -0.41
VRK3-212ENST00000596814 TSC22D3Q99576 134 aa12.48□□□□□ -0.41
VRK3-212ENST00000596814 SPOCK3Q9BQ16 436 aa12.48□□□□□ -0.41
VRK3-212ENST00000596814 CXXC4Q9H2H0 198 aa12.48□□□□□ -0.41
VRK3-212ENST00000596814 LRRK2Q5S007 2527 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 TMEM210A6NLX4 147 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 A6NNC1 897 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 HPGDSO60760 199 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 GOSR1O95249 250 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 UBBP0CG47 229 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 TMEM225BP0DP42 221 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 ZNF81P51508 661 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 MZT1Q08AG7 82 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 LSAMPQ13449 338 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 EFNB3Q15768 340 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 LINC00299Q6ZSB3 139 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 ZNF573Q86YE8 665 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 CALHM1Q8IU99 346 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 ZNF611Q8N823 705 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 ELMOD3Q96FG2 381 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 CEP19Q96LK0 163 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 S100A13Q99584 98 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 KCNK15Q9H427 330 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 C14orf119Q9NWQ9 140 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 ADAM30Q9UKF2 790 aa12.47□□□□□ -0.41
VRK3-212ENST00000596814 PKDREJQ9NTG1 2253 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 LRP5LA4QPB2 252 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 B9A039 149 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 F5H5P2 479 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 M0R233 179 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 SPRY1O43609 319 aaPredicted RBP12.46□□□□□ -0.41
VRK3-212ENST00000596814 SPRY3O43610 288 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 NAT2P11245 290 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 PDZK1IP1Q13113 114 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 C2orf76Q3KRA6 126 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 WDR86Q86TI4 376 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 FBXL14Q8N1E6 418 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 FBXW5Q969U6 566 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 MIXL1Q9H2W2 232 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 GHRLQ9UBU3 117 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 ING4Q9UNL4 249 aa12.46□□□□□ -0.41
VRK3-212ENST00000596814 SPTAN1Q13813 2472 aaKnown RBP12.45□□□□□ -0.42
VRK3-212ENST00000596814 TMEM272A0A1B0GTI8 110 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 A1L4Q6 167 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 ANGPTL7O43827 346 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 CLDN1O95832 211 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 ZNF154Q13106 437 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 FAM76BQ5HYJ3 339 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 UBE2NLQ5JXB2 153 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 HAGHLQ6PII5 290 aaPredicted RBP12.45□□□□□ -0.42
VRK3-212ENST00000596814 C1QL2Q7Z5L3 287 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 MUC15Q8N387 334 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 ZSCAN4Q8NAM6 433 aaPredicted RBP12.45□□□□□ -0.42
VRK3-212ENST00000596814 C1orf147Q96MC9 270 aaPredicted RBP12.45□□□□□ -0.42
VRK3-212ENST00000596814 WDFY2Q96P53 400 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 OR51I2Q9H344 312 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 ELL3Q9HB65 397 aaPredicted RBP12.45□□□□□ -0.42
VRK3-212ENST00000596814 ZDHHC8Q9ULC8 765 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 J3QT63 122 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 HS3ST1O14792 307 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 LDLRAD4O15165 306 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 CYB5AP00167 134 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 GRPP07492 148 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 VSIG8P0DPA2 414 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 TNFSF4P23510 183 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 CD200P41217 278 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 MAB21L1Q13394 359 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 SLC22A6Q4U2R8 563 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 SLC25A26Q70HW3 274 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 LRRC28Q86X40 367 aaPredicted RBP12.45□□□□□ -0.42
VRK3-212ENST00000596814 PXT1Q8NFP0 134 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 SLC25A38Q96DW6 304 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 CMTM3Q96MX0 182 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 PKIBQ9C010 78 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 DYNLRB1Q9NP97 96 aa12.45□□□□□ -0.42
VRK3-212ENST00000596814 C17orf100A8MU93 164 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 FAM25AB3EWG3 89 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 FAM25CB3EWG5 89 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 FAM25GB3EWG6 89 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 IGHV1-46P01743 117 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 APOA1P02647 267 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 EIF4EP06730 217 aaKnown RBP12.44□□□□□ -0.42
VRK3-212ENST00000596814 MPZP25189 248 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 TNFSF8P32971 234 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 SNRPD2P62316 118 aaKnown RBP12.44□□□□□ -0.42
VRK3-212ENST00000596814 QRFPP83859 136 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 PLA2G7Q13093 441 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 RSU1Q15404 277 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 MST1LQ2TV78 715 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 OR10K2Q6IF99 312 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 ASCL4Q6XD76 172 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 OR2W3Q7Z3T1 314 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 SAXO1Q8IYX7 474 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 OR51F2Q8NH61 342 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 FAM46BQ96A09 425 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 OR2V2Q96R30 315 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 DIRC2Q96SL1 478 aa12.44□□□□□ -0.42
VRK3-212ENST00000596814 CST11Q9H112 138 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms