RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 C10orf35Q96D05 121 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 CHST5Q9GZS9 411 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 MMP26Q9NRE1 261 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 CLN8Q9UBY8 286 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 OR5V1Q9UGF6 321 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 CAB39Q9Y376 341 aaPredicted RBP12.14□□□□□ -0.47
VRK3-206ENST00000594090 EXOSC1Q9Y3B2 195 aaKnown RBP12.14□□□□□ -0.47
VRK3-206ENST00000594090 PQLC2LA1A4F0 135 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 E9PI62 339 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 ADAM20O43506 726 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 NDUFA2O43678 99 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 GATBO75879 557 aaKnown RBP12.13□□□□□ -0.47
VRK3-206ENST00000594090 PIPP12273 146 aaPredicted RBP12.13□□□□□ -0.47
VRK3-206ENST00000594090 SRP14P37108 136 aaKnown RBP12.13□□□□□ -0.47
VRK3-206ENST00000594090 TGM4P49221 684 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 GBX2P52951 348 aaPredicted RBP12.13□□□□□ -0.47
VRK3-206ENST00000594090 GMFBP60983 142 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 UBE2V2Q15819 145 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 OR2G6Q5TZ20 316 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 WDR25Q64LD2 544 aaPredicted RBP12.13□□□□□ -0.47
VRK3-206ENST00000594090 HAGHLQ6PII5 290 aaPredicted RBP12.13□□□□□ -0.47
VRK3-206ENST00000594090 C1orf229Q6ZS94 237 aaPredicted RBP12.13□□□□□ -0.47
VRK3-206ENST00000594090 ZNF573Q86YE8 665 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 ZNF676Q8N7Q3 588 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 OR10AC1Q8NH08 325 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 HAVCR2Q8TDQ0 301 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 AQP3Q92482 292 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 GGHQ92820 318 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 C12orf43Q96C57 262 aaKnown RBP12.13□□□□□ -0.47
VRK3-206ENST00000594090 SEH1LQ96EE3 360 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 ADAT3Q96EY9 351 aaPredicted RBP12.13□□□□□ -0.47
VRK3-206ENST00000594090 TMEM80Q96HE8 168 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 TECTBQ96PL2 329 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 WDR13Q9H1Z4 485 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 VCX3BQ9H321 246 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 CNOT2Q9NZN8 540 aaKnown RBP12.13□□□□□ -0.47
VRK3-206ENST00000594090 ERVK-18Q9QC07 812 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 HHLA2Q9UM44 414 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 INSIG2Q9Y5U4 225 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 ARHGAP32A7KAX9 2087 aa12.13□□□□□ -0.47
VRK3-206ENST00000594090 EFCAB10A6NFE3 127 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 TMEM212A6NML5 194 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 J3QT63 122 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 XPNPEP2O43895 674 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 AVPP01185 164 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 CCDC159P0C7I6 412 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 HAAOP46952 286 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 NPY4RP50391 375 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 PAX2Q02962 417 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 MED21Q13503 144 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 STUMQ69YW2 141 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 TMPRSS11AQ6ZMR5 421 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 OR51A4Q8NGJ6 313 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 OR13C3Q8NGS6 347 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 ZNF671Q8TAW3 534 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 TRMT10AQ8TBZ6 339 aaKnown RBP12.12□□□□□ -0.47
VRK3-206ENST00000594090 NPRL2Q8WTW4 380 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 PP6455Q8WZ26 134 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 PLCXD1Q9NUJ7 323 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 KAAG1Q9UBP8 84 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 DNAJB11Q9UBS4 358 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 PSORS1C1Q9UIG5 152 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 SLC7A11Q9UPY5 501 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 CUBNO60494 3623 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 NAV3Q8IVL0 2385 aa12.12□□□□□ -0.47
VRK3-206ENST00000594090 LOC105371242A0A075B767 164 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 TMPRSS2O15393 492 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 ZFPL1O95159 310 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 ATP6V1G2O95670 118 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 ZNF20P17024 532 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 GLRA1P23415 457 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 GTF2A1P52655 376 aaPredicted RBP12.11□□□□□ -0.47
VRK3-206ENST00000594090 ST3GAL4Q11206 333 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 RIPK1Q13546 671 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 XAF1Q6GPH4 301 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 OR5AK2Q8NH90 309 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 DACT3Q96B18 629 aaPredicted RBP12.11□□□□□ -0.47
VRK3-206ENST00000594090 FGGYQ96C11 551 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 PDCD1LG2Q9BQ51 273 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 COMMD4Q9H0A8 199 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 C7orf69Q9H7B7 122 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 SMURF1Q9HCE7 757 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 SNTG1Q9NSN8 517 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 OPN4Q9UHM6 478 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 CLEC2DQ9UHP7 191 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 POLDIP2Q9Y2S7 368 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 IGHV2-70DA0A0C4DH43 119 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 TRBV2A0A0J9YWF9 115 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 A0A1B0GW55 424 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 FAM230AA0A1W2PPH8 454 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 C22orf46C9J442 243 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 SYNGR1O43759 233 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 FCN3O75636 299 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 SERPINA3P01011 423 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 IFNA2P01563 188 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 RPSAP08865 295 aaKnown RBP12.11□□□□□ -0.47
VRK3-206ENST00000594090 DUX4L2P0CJ85 424 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 DUX4L3P0CJ86 424 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 DUX4L4P0CJ87 422 aa12.11□□□□□ -0.47
VRK3-206ENST00000594090 DUX4L5P0CJ88 424 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms