RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 RASSF4Q9H2L5 321 aa11.59□□□□□ -0.55
CLIP3-205ENST00000592017 OR51I2Q9H344 312 aa11.59□□□□□ -0.55
CLIP3-205ENST00000592017 DCLRE1BQ9H816 532 aa11.59□□□□□ -0.55
CLIP3-205ENST00000592017 SNTG1Q9NSN8 517 aa11.59□□□□□ -0.55
CLIP3-205ENST00000592017 NKX1-2Q9UD57 310 aaPredicted RBP11.59□□□□□ -0.55
CLIP3-205ENST00000592017 INSIG2Q9Y5U4 225 aa11.59□□□□□ -0.55
CLIP3-205ENST00000592017 AUP1Q9Y679 476 aa11.59□□□□□ -0.55
CLIP3-205ENST00000592017 ARHGAP32A7KAX9 2087 aa11.59□□□□□ -0.55
CLIP3-205ENST00000592017 IGHV2-70DA0A0C4DH43 119 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 A0A1B0GW55 424 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 ANKRD61A6NGH8 418 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 DHRS7CA6NNS2 312 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 SRRM5B3KS81 715 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-205ENST00000592017 NDUFA2O43678 99 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 IGHA1P01876 353 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 DUX4L2P0CJ85 424 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 DUX4L3P0CJ86 424 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 DUX4L4P0CJ87 422 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 DUX4L5P0CJ88 424 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 DUX4L6P0CJ89 424 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 DUX4L7P0CJ90 424 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 MUC1P15941 1255 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-205ENST00000592017 GLRA1P23415 457 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 CAPGP40121 348 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 HAAOP46952 286 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 NANOS3P60323 173 aaKnown RBP11.58□□□□□ -0.56
CLIP3-205ENST00000592017 ADARB1P78563 741 aaKnown RBP11.58□□□□□ -0.56
CLIP3-205ENST00000592017 SCGB2A2Q13296 93 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 KLHL22Q53GT1 634 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 ARMCX4Q5H9R4 360 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 FAM76BQ5HYJ3 339 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 TMEM42Q69YG0 159 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 DUX4L9Q6RFH8 374 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-205ENST00000592017 ZNF841Q6ZN19 808 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 USP43Q70EL4 1123 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 KRT74Q7RTS7 529 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 FAM216BQ8N7L0 139 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 OR5T2Q8NGG2 359 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 ZNF418Q8TF45 676 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-205ENST00000592017 C22orf15Q8WYQ4 148 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 ST8SIA4Q92187 359 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 RNF166Q96A37 237 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-205ENST00000592017 CCL13Q99616 98 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 SLC6A7Q99884 636 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 ISG20L2Q9H9L3 353 aaKnown RBP11.58□□□□□ -0.56
CLIP3-205ENST00000592017 SMURF1Q9HCE7 757 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 INPP5EQ9NRR6 644 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 ERVK13-1Q9NX77 482 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 FRRS1LQ9P0K9 344 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 DUX4Q9UBX2 424 aa11.58□□□□□ -0.56
CLIP3-205ENST00000592017 FAM230AA0A1W2PPH8 454 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 NKX6-3A6NJ46 265 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 C22orf46C9J442 243 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 DVL1O14640 695 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 TFF1P04155 84 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 ZNF20P17024 532 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 CFHR2P36980 270 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 NPY4RP50391 375 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 HILS1P60008 231 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 PAX2Q02962 417 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 SLC34A1Q06495 639 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 IKZF1Q13422 519 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 ALKBH1Q13686 389 aaKnown RBP11.57□□□□□ -0.56
CLIP3-205ENST00000592017 KLF17Q5JT82 389 aaPredicted RBP11.57□□□□□ -0.56
CLIP3-205ENST00000592017 TMEM244Q5VVB8 128 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 Q6ZSR3 168 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 C8orf59Q8N0T1 100 aaPredicted RBP11.57□□□□□ -0.56
CLIP3-205ENST00000592017 BATF2Q8N1L9 274 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 SYS1Q8N2H4 156 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 ZNF676Q8N7Q3 588 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 CCDC54Q8NEL0 328 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 ZFAND2BQ8WV99 257 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 RAB40AQ8WXH6 277 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 AQP3Q92482 292 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 NUDT16L1Q9BRJ7 211 aaKnown RBP11.57□□□□□ -0.56
CLIP3-205ENST00000592017 MRPS18AQ9NVS2 196 aaKnown RBP11.57□□□□□ -0.56
CLIP3-205ENST00000592017 SLC7A11Q9UPY5 501 aa11.57□□□□□ -0.56
CLIP3-205ENST00000592017 PQLC2LA1A4F0 135 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 J3QT63 122 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 SYNGR1O43759 233 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 ENSAO43768 121 aaKnown RBP11.56□□□□□ -0.56
CLIP3-205ENST00000592017 GATBO75879 557 aaKnown RBP11.56□□□□□ -0.56
CLIP3-205ENST00000592017 PLATP00750 562 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 GNAO1P09471 354 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 GBX2P52951 348 aaPredicted RBP11.56□□□□□ -0.56
CLIP3-205ENST00000592017 PAX8Q06710 450 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 IL18R1Q13478 541 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 TUSC1Q2TAM9 212 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 STUMQ69YW2 141 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 FDX2Q6P4F2 183 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 SLC36A1Q7Z2H8 476 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 ZNF573Q86YE8 665 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 FGFRL1Q8N441 504 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 OR13C3Q8NGS6 347 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 OR10AC1Q8NH08 325 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 ZNF671Q8TAW3 534 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 TMIGD2Q96BF3 282 aa11.56□□□□□ -0.56
CLIP3-205ENST00000592017 C12orf43Q96C57 262 aaKnown RBP11.56□□□□□ -0.56
CLIP3-205ENST00000592017 ZNF488Q96MN9 340 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms