RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 TEX36Q5VZQ5 186 aa16.24■□□□□ 0.19
SS18-209ENST00000578595 C1orf229Q6ZS94 237 aaPredicted RBP16.24■□□□□ 0.19
SS18-209ENST00000578595 C1QL2Q7Z5L3 287 aa16.24■□□□□ 0.19
SS18-209ENST00000578595 C8orf59Q8N0T1 100 aaPredicted RBP16.24■□□□□ 0.19
SS18-209ENST00000578595 ZNF671Q8TAW3 534 aa16.24■□□□□ 0.19
SS18-209ENST00000578595 PELI1Q96FA3 418 aa16.24■□□□□ 0.19
SS18-209ENST00000578595 NUDT16L1Q9BRJ7 211 aaKnown RBP16.24■□□□□ 0.19
SS18-209ENST00000578595 WDR13Q9H1Z4 485 aa16.24■□□□□ 0.19
SS18-209ENST00000578595 OR51I2Q9H344 312 aa16.24■□□□□ 0.19
SS18-209ENST00000578595 ERVK13-1Q9NX77 482 aa16.24■□□□□ 0.19
SS18-209ENST00000578595 IGHV2-70DA0A0C4DH43 119 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 IRGMA1A4Y4 181 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 DHRS7CA6NNS2 312 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 GATBO75879 557 aaKnown RBP16.23■□□□□ 0.19
SS18-209ENST00000578595 SERPINA3P01011 423 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 IGHA1P01876 353 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 EPHA1P21709 976 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 NANOS3P60323 173 aaKnown RBP16.23■□□□□ 0.19
SS18-209ENST00000578595 SRSF2Q01130 221 aaKnown RBP16.23■□□□□ 0.19
SS18-209ENST00000578595 SLC34A1Q06495 639 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 IKZF1Q13422 519 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 SLC36A1Q7Z2H8 476 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 BATF2Q8N1L9 274 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 CCDC54Q8NEL0 328 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 RAB40AQ8WXH6 277 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 TMIGD2Q96BF3 282 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 ISG20L2Q9H9L3 353 aaKnown RBP16.23■□□□□ 0.19
SS18-209ENST00000578595 SMURF1Q9HCE7 757 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 FRRS1LQ9P0K9 344 aa16.23■□□□□ 0.19
SS18-209ENST00000578595 NKX1-2Q9UD57 310 aaPredicted RBP16.23■□□□□ 0.19
SS18-209ENST00000578595 POLR3KQ9Y2Y1 108 aaPredicted RBP16.23■□□□□ 0.19
SS18-209ENST00000578595 RNF212BA8MTL3 300 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 DVL1O14640 695 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 ENSAO43768 121 aaKnown RBP16.22■□□□□ 0.19
SS18-209ENST00000578595 PLATP00750 562 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 MYL12AP19105 171 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 GABRA2P47869 451 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 GBX2P52951 348 aaPredicted RBP16.22■□□□□ 0.19
SS18-209ENST00000578595 ADARB1P78563 741 aaKnown RBP16.22■□□□□ 0.19
SS18-209ENST00000578595 IL18R1Q13478 541 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 ALKBH1Q13686 389 aaKnown RBP16.22■□□□□ 0.19
SS18-209ENST00000578595 CD276Q5ZPR3 534 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 ZNF573Q86YE8 665 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 SYS1Q8N2H4 156 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 FAM216BQ8N7L0 139 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 OR13C3Q8NGS6 347 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 AQP3Q92482 292 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 COMMD4Q9H0A8 199 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 NLKQ9UBE8 527 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 COL6A5A8TX70 2615 aa16.22■□□□□ 0.19
SS18-209ENST00000578595 A0A1B0GW55 424 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.21■□□□□ 0.19
SS18-209ENST00000578595 J3QT63 122 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 TCF21O43680 179 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 TFF1P04155 84 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 DUX4L2P0CJ85 424 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 DUX4L3P0CJ86 424 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 DUX4L4P0CJ87 422 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 DUX4L5P0CJ88 424 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 DUX4L6P0CJ89 424 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 DUX4L7P0CJ90 424 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 CFHR2P36980 270 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 CNN3Q15417 329 aaKnown RBP16.21■□□□□ 0.19
SS18-209ENST00000578595 FAM76BQ5HYJ3 339 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 TMEM42Q69YG0 159 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 DUX4L9Q6RFH8 374 aaPredicted RBP16.21■□□□□ 0.19
SS18-209ENST00000578595 ZNF841Q6ZN19 808 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 BPIFB2Q8N4F0 458 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 C22orf15Q8WYQ4 148 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 H1FXQ92522 213 aaKnown RBP16.21■□□□□ 0.19
SS18-209ENST00000578595 C12orf43Q96C57 262 aaKnown RBP16.21■□□□□ 0.19
SS18-209ENST00000578595 BORCS8Q96FH0 119 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 ZNF488Q96MN9 340 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 CHCHD3Q9NX63 227 aaKnown RBP16.21■□□□□ 0.19
SS18-209ENST00000578595 DUX4Q9UBX2 424 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 OPN4Q9UHM6 478 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 HHLA2Q9UM44 414 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 POLDIP2Q9Y2S7 368 aa16.21■□□□□ 0.19
SS18-209ENST00000578595 PQLC2LA1A4F0 135 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 C22orf46C9J442 243 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 NDUFB3O43676 98 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 SYNGR1O43759 233 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 INMTO95050 263 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 GNAO1P09471 354 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 CCDC159P0C7I6 412 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 MED21Q13503 144 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 LRRC10Q5BKY1 277 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 TMPRSS11AQ6ZMR5 421 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 KRT74Q7RTS7 529 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 ZNF418Q8TF45 676 aaPredicted RBP16.2■□□□□ 0.18
SS18-209ENST00000578595 TSEN15Q8WW01 171 aaKnown RBP16.2■□□□□ 0.18
SS18-209ENST00000578595 FGGYQ96C11 551 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 CHST5Q9GZS9 411 aa16.2■□□□□ 0.18
SS18-209ENST00000578595 FGF20Q9NP95 211 aaPredicted RBP16.2■□□□□ 0.18
SS18-209ENST00000578595 MRPS18AQ9NVS2 196 aaKnown RBP16.2■□□□□ 0.18
SS18-209ENST00000578595 IGHV3OR16-10A0A075B7F0 116 aa16.19■□□□□ 0.18
SS18-209ENST00000578595 OR2AT4A6NND4 320 aa16.19■□□□□ 0.18
SS18-209ENST00000578595 H0YAE9 185 aa16.19■□□□□ 0.18
SS18-209ENST00000578595 NXPH2O95156 264 aa16.19■□□□□ 0.18
SS18-209ENST00000578595 DCKP27707 260 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms