RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 C22orf15Q8WYQ4 148 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 ST8SIA4Q92187 359 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 RPL3LQ92901 407 aaKnown RBP6.74□□□□□ -1.33
VPS53-214ENST00000572607 MRPL48Q96GC5 212 aaKnown RBP6.74□□□□□ -1.33
VPS53-214ENST00000572607 HRASLS5Q96KN8 279 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 Q96MT0 163 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 KAAG1Q9UBP8 84 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 CTSZQ9UBR2 303 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 MRM2Q9UI43 246 aaKnown RBP6.74□□□□□ -1.33
VPS53-214ENST00000572607 PCDHGB1Q9Y5G3 927 aa6.74□□□□□ -1.33
VPS53-214ENST00000572607 TRAV40A0A0B4J280 105 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 DAPL1A0PJW8 107 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 DHRS7CA6NNS2 312 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 SRRM5B3KS81 715 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 ZNF879B4DU55 563 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 P2RY10O00398 339 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 DLGAP1O14490 977 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 DVL1O14640 695 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 MAGEB4O15481 346 aaPredicted RBP6.73□□□□□ -1.33
VPS53-214ENST00000572607 AKR7A2O43488 359 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 SYT7O43581 403 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 ENTPD6O75354 484 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 VENTXO95231 258 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 SERPINA3P01011 423 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 NRASP01111 189 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 FSHBP01225 129 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 IGLV3-1P01715 115 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 TTRP02766 147 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 CFHR2P36980 270 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 SNRPGP62308 76 aaKnown RBP6.73□□□□□ -1.33
VPS53-214ENST00000572607 HOXA4Q00056 320 aaPredicted RBP6.73□□□□□ -1.33
VPS53-214ENST00000572607 IKZF1Q13422 519 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 ZSCAN26Q16670 478 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 ODF4Q2M2E3 257 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 LRRC10Q5BKY1 277 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 WDR38Q5JTN6 314 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 SLC25A30Q5SVS4 291 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 GPR157Q5UAW9 335 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 METTL11BQ5VVY1 283 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 HAGHLQ6PII5 290 aaPredicted RBP6.73□□□□□ -1.33
VPS53-214ENST00000572607 ZNF841Q6ZN19 808 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 ZNF573Q86YE8 665 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 C11orf53Q8IXP5 236 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 CMTM4Q8IZR5 234 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 SCCPDHQ8NBX0 429 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 ZNF555Q8NEP9 628 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 TMIGD2Q96BF3 282 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 UPRTQ96BW1 309 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 RNFT2Q96EX2 444 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 CCL13Q99616 98 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 DNTTIP1Q9H147 329 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 PPP1R3EQ9H7J1 279 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 ZMAT3Q9HA38 289 aaKnown RBP6.73□□□□□ -1.33
VPS53-214ENST00000572607 NLKQ9UBE8 527 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 GNG8Q9UK08 70 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 SLC7A11Q9UPY5 501 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 POLDIP2Q9Y2S7 368 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 TRRAPQ9Y4A5 3859 aa6.73□□□□□ -1.33
VPS53-214ENST00000572607 ANKRD61A6NGH8 418 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 C22orf46C9J442 243 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 SRSF10O75494 262 aaKnown RBP6.72□□□□□ -1.33
VPS53-214ENST00000572607 GATBO75879 557 aaKnown RBP6.72□□□□□ -1.33
VPS53-214ENST00000572607 TOX4O94842 621 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 OCM2P0CE71 109 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 OCMP0CE72 109 aaPredicted RBP6.72□□□□□ -1.33
VPS53-214ENST00000572607 UBCP0CG48 685 aaKnown RBP6.72□□□□□ -1.33
VPS53-214ENST00000572607 HAAOP46952 286 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 GABRA2P47869 451 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 FGF12P61328 243 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 ACTA2P62736 377 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 ACTG2P63267 376 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 IL13RA1P78552 427 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 PAX2Q02962 417 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 BAMBIQ13145 260 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 OCLNQ16625 522 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 TP53I3Q53FA7 332 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 FAM76BQ5HYJ3 339 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 STUMQ69YW2 141 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 C12orf54Q6X4T0 127 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 BTN2A1Q7KYR7 527 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 KRT74Q7RTS7 529 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 SSX6Q7RTT6 188 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 KCTD20Q7Z5Y7 419 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 CATSPERDQ86XM0 798 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 FAM216BQ8N7L0 139 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 SIGLECL1Q8N7X8 197 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.72□□□□□ -1.33
VPS53-214ENST00000572607 OR14K1Q8NGZ2 314 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 PPP1R14AQ96A00 147 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 MED30Q96HR3 178 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 PCGF1Q9BSM1 259 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 RASSF4Q9H2L5 321 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 OR51I2Q9H344 312 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 SMURF1Q9HCE7 757 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 GPR173Q9NS66 373 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 SNTG1Q9NSN8 517 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 RASL12Q9NYN1 266 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 ZNF69Q9UC07 566 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 SLC22A13Q9Y226 551 aa6.72□□□□□ -1.33
VPS53-214ENST00000572607 V9GYS6 101 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms