RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 OR14K1Q8NGZ2 314 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 MRPL24Q96A35 216 aaKnown RBP11.6□□□□□ -0.55
CLN3-210ENST00000563874 BSCL2Q96G97 398 aaPredicted RBP11.6□□□□□ -0.55
CLN3-210ENST00000563874 LYZL4Q96KX0 146 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 CNTNAP3Q9BZ76 1288 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 CHRNA10Q9GZZ6 450 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 DNAJB11Q9UBS4 358 aa11.6□□□□□ -0.55
CLN3-210ENST00000563874 A0A1B0GV50 99 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 PQLC2LA1A4F0 135 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 C2CD4DB7Z1M9 353 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 NME2P1O60361 137 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 ACAA1P09110 424 aaPredicted RBP11.59□□□□□ -0.55
CLN3-210ENST00000563874 ADH6P28332 368 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 FHITP49789 147 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 SULT1A2P50226 295 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 UBE2V2Q15819 145 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 PLPPR5Q32ZL2 321 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 DBX2Q6ZNG2 339 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 DOK3Q7L591 496 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 SLC16A13Q7RTY0 426 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 D2HGDHQ8N465 521 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 NAXEQ8NCW5 288 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 NANPQ8TBE9 248 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 ERGIC1Q969X5 290 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 NAA11Q9BSU3 229 aaPredicted RBP11.59□□□□□ -0.55
CLN3-210ENST00000563874 METTL7AQ9H8H3 244 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 ZNF581Q9P0T4 197 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 MEMO1Q9Y316 297 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 TMEM238LA0A1B0GVL6 79 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 A0A1W2PNV4 684 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 APOC1P02654 83 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 HEXAP06865 529 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 ZNF43P17038 809 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 LTBRP36941 435 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 PCP4P48539 62 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 TMEM268Q5VZI3 342 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 PLXDC1Q8IUK5 500 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 SULF2Q8IWU5 870 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 LRRC18Q8N456 261 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 FNDC9Q8TBE3 224 aa11.59□□□□□ -0.55
CLN3-210ENST00000563874 EMG1Q92979 244 aaKnown RBP11.59□□□□□ -0.55
CLN3-210ENST00000563874 ZNF501Q96CX3 271 aaPredicted RBP11.59□□□□□ -0.55
CLN3-210ENST00000563874 PRSS44E7EML9 344 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 CST4P01036 141 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 SNRNP70P08621 437 aaKnown RBP11.58□□□□□ -0.55
CLN3-210ENST00000563874 CD27P26842 260 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 RRADP55042 308 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 ZNF616Q08AN1 781 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 TMEM176BQ3YBM2 270 aaPredicted RBP11.58□□□□□ -0.55
CLN3-210ENST00000563874 SLC25A47Q6Q0C1 308 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 ANKRD37Q7Z713 158 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 DMBX1Q8NFW5 382 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 TOMM40LQ969M1 308 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 S100A13Q99584 98 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 C1orf123Q9NWV4 160 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 AMDHD2Q9Y303 409 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 SDK2Q58EX2 2172 aa11.58□□□□□ -0.55
CLN3-210ENST00000563874 TNRC18O15417 2968 aaPredicted RBP11.58□□□□□ -0.55
CLN3-210ENST00000563874 FIGNL2A6NMB9 653 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 ZNF726A6NNF4 738 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 C1QL1O75973 258 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 OR2J2O76002 312 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 HNRNPKP61978 463 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLN3-210ENST00000563874 EIF5AP63241 154 aaKnown RBP11.58□□□□□ -0.56
CLN3-210ENST00000563874 CHAF1BQ13112 559 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 TSPO2Q5TGU0 170 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 GGNBP1Q5YKI7 109 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 FAM89BQ8N5H3 189 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 PLPP5Q8NEB5 264 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 IP6K3Q96PC2 410 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 RAB33BQ9H082 229 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 ZNF160Q9HCG1 818 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 SMCO4Q9NRQ5 59 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 CACFD1Q9UGQ2 172 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 OR5H15A6NDH6 313 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 FAM157AC9JC47 383 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 XRCC2O43543 280 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 DUX1O43812 170 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 DIRAS3O95661 229 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 OPRM1P35372 400 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 RAB5BP61020 215 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 NFAM1Q8NET5 270 aaPredicted RBP11.58□□□□□ -0.56
CLN3-210ENST00000563874 SSC4DQ8WTU2 575 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 SHDQ96IW2 340 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 PRRX2Q99811 253 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 PLEKHJ1Q9NW61 149 aa11.58□□□□□ -0.56
CLN3-210ENST00000563874 TAAR5O14804 337 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 TIAF1O95411 115 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 DBHP09172 617 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 DVL1P1P54792 670 aaPredicted RBP11.57□□□□□ -0.56
CLN3-210ENST00000563874 CLDN17P56750 224 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 SMCO1Q147U7 214 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 MIDNQ504T8 468 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 PRAMEF20Q5VT98 475 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 BRICD5Q6PL45 260 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 MRGPRX4Q96LA9 322 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 LIME1Q9H400 295 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 VPS13AQ96RL7 3174 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 A0A1W2PPE3 182 aa11.57□□□□□ -0.56
CLN3-210ENST00000563874 ANGPTL7O43827 346 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms