RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 IGSF6O95976 241 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MT-CO2P00403 227 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 HPRT1P00492 218 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 CST4P01036 141 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 IGF2P01344 180 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 IFNA5P01569 189 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 TYMSP04818 313 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 DCNP07585 359 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 RGPD1P0DJD0 1748 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 PPIAL4FP0DN26 164 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 CD79AP11912 226 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 GPX2P18283 190 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MMP11P24347 488 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 ELAVL4P26378 380 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 CD27P26842 260 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 PSMB9P28065 219 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 BRS3P32247 399 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 RPL14P50914 215 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 LBX1P52954 281 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 GEMP55040 296 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 SLC35A1P78382 337 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 H3F3AP84243 136 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 CDK6Q00534 326 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 BDH1Q02338 343 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 PAX5Q02548 391 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 CD47Q08722 323 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MZT1Q08AG7 82 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 SRSF6Q13247 344 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 SERTAD2Q14140 314 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 HERPUD1Q15011 391 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 EBPQ15125 230 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 RAB35Q15286 201 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 SURF2Q15527 256 aaPredicted RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 ZBTB6Q15916 424 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 TMEM249Q2WGJ8 235 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 PLPPR5Q32ZL2 321 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 CARD16Q5EG05 197 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 SPIN3Q5JUX0 258 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 FAM74A1Q5RGS3 127 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 TMEM236Q5W0B7 351 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 CST9Q5W186 159 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 APOBEC3HQ6NTF7 200 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 PWWP2BQ6NUJ5 590 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MFSD12Q6NUT3 480 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 FBXL22Q6P050 247 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 ATRAIDQ6UW56 229 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 APOOLQ6UXV4 268 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 TMEM144Q7Z5S9 345 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 KCNMB4Q86W47 210 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 LAX1Q8IWV1 398 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 HS3ST5Q8IZT8 346 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 LGI3Q8N145 548 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 Q8N402 240 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 PNKDQ8N490 385 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 FTMTQ8N4E7 242 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MAPK1IP1LQ8NDC0 245 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 SDR9C7Q8NEX9 313 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 TSTD1Q8NFU3 115 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 OR5A2Q8NGI9 324 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 OR10G8Q8NGN5 311 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 OR8J1Q8NGP2 316 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 OR2T35Q8NGX2 323 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 OR10K1Q8NGX5 313 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 OR5AK3PQ8NH89 298 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 CD99L2Q8TCZ2 262 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 CANT1Q8WVQ1 401 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 TAF15Q92804 592 aaKnown RBP eCLIP2.89□□□□□ -1.95
VPS35-203ENST00000562420 HIST1H2ACQ93077 130 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 TADA1Q96BN2 335 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 COQ2Q96H96 371 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 DIRAS2Q96HU8 199 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 SLC35E1Q96K37 410 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 POM121L2Q96KW2 1035 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 LINC00479Q96M42 142 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 JSRP1Q96MG2 331 aaPredicted RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 MS4A4EQ96PG1 132 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 TP53RKQ96S44 253 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 NPY6RQ99463 290 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 COPS8Q99627 209 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 NPAS2Q99743 824 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 SLC6A7Q99884 636 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 CCDC3Q9BQI4 270 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MIEN1Q9BRT3 115 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 ST6GALNAC5Q9BVH7 336 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MS4A8Q9BY19 250 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 PRRG3Q9BZD7 231 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 C20orf85Q9H1P6 137 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 TXNIPQ9H3M7 391 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 ST6GALNAC4Q9H4F1 302 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 BANF2Q9H503 90 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 ACTL8Q9H568 366 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 ZDHHC6Q9H6R6 413 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 ZDHHC11Q9H8X9 412 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MTHFD2LQ9H903 347 aaPredicted RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 PATZ1Q9HBE1 687 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 DNAJC4Q9NNZ3 241 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 LHX9Q9NQ69 397 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 TMEM242Q9NWH2 141 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MTCH1Q9NZJ7 389 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 ZNF222Q9UK12 451 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms