RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 PRRX2Q99811 253 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 WNT5BQ9H1J7 359 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 STARD5Q9NSY2 213 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 TUBD1Q9UJT1 453 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 DKKL1Q9UK85 242 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 OR52A1Q9UKL2 312 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 MRPS2Q9Y399 296 aaKnown RBP9.63□□□□□ -0.87
USP3-206ENST00000558157 FBXO7Q9Y3I1 522 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 V9GYS6 101 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 RP1P56715 2156 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 ADAMTS20P59510 1910 aa9.63□□□□□ -0.87
USP3-206ENST00000558157 EREGO14944 169 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 CHRM2P08172 466 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 G0S2P27469 103 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 NPY4RP50391 375 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 ERVFRD-1P60508 538 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 SLC17A1Q14916 467 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 ZNHIT3Q15649 155 aaPredicted RBP9.62□□□□□ -0.87
USP3-206ENST00000558157 C1orf87Q8N0U7 546 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 PRR18Q8N4B5 295 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 GVQW1Q8N7I0 195 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 OR6N2Q8NGY6 317 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 OTOSQ8NHW6 89 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 COL26A1Q96A83 441 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 NUDT22Q9BRQ3 303 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 COL25A1Q9BXS0 654 aaPredicted RBP9.62□□□□□ -0.87
USP3-206ENST00000558157 DNAJB12Q9NXW2 375 aaKnown RBP9.62□□□□□ -0.87
USP3-206ENST00000558157 FBLN5Q9UBX5 448 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 HIF3AQ9Y2N7 669 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 MMACHCQ9Y4U1 282 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 LNP1A1A4G5 178 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 FAM171A2A8MVW0 826 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 RAMP1O60894 148 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 PNLIPP16233 465 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 ZNF25P17030 456 aaPredicted RBP9.62□□□□□ -0.87
USP3-206ENST00000558157 MSX1P28360 303 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 SUPT4H1P63272 117 aaKnown RBP9.62□□□□□ -0.87
USP3-206ENST00000558157 BTN3A2P78410 334 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 CLN3Q13286 438 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 SLC9A3R2Q15599 337 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 HAGHQ16775 308 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 ANKRD55Q3KP44 614 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 PDZD11Q5EBL8 140 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 CYB5R2Q6BCY4 276 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 PLXDC1Q8IUK5 500 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 OR14K1Q8NGZ2 314 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 ABHD5Q8WTS1 349 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 SLC25A43Q8WUT9 341 aaPredicted RBP9.62□□□□□ -0.87
USP3-206ENST00000558157 TVP23CQ96ET8 276 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 C1orf123Q9NWV4 160 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 HS3ST3B1Q9Y662 390 aa9.62□□□□□ -0.87
USP3-206ENST00000558157 GPR179Q6PRD1 2367 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 CDRT15L2A8MXV6 281 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 PRH1P02810 166 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 SMIM10L1P0DMW3 83 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 EPHA1P21709 976 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 GRK6P43250 576 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 GABRA4P48169 554 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 TDGF1P3P51864 188 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 CCL7P80098 99 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 ROM1Q03395 351 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 SPEM2Q0P670 501 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 COTL1Q14019 142 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 COA6Q5JTJ3 125 aaKnown RBP9.61□□□□□ -0.87
USP3-206ENST00000558157 GPR157Q5UAW9 335 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 PRSS41Q7RTY9 318 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 DPY19L4Q7Z388 723 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 LYPD6Q86Y78 171 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 FAM219AQ8IW50 185 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 FRZBQ92765 325 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 SLC25A44Q96H78 314 aaPredicted RBP9.61□□□□□ -0.87
USP3-206ENST00000558157 POM121Q96HA1 1249 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 SMIM10Q96HG1 83 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 FAM210BQ96KR6 192 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 SNHG12Q9BXW3 62 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 OPN3Q9H1Y3 402 aaPredicted RBP9.61□□□□□ -0.87
USP3-206ENST00000558157 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.61□□□□□ -0.87
USP3-206ENST00000558157 TAS2R4Q9NYW5 299 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 GSKIPQ9P0R6 139 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 RALGAPA1Q6GYQ0 2036 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 SCN3AQ9NY46 2000 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 NPIPA5A0A0B4J1W7 369 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 ZNF860A6NHJ4 632 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 E5RGE8 158 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 FTCDNL1E5RQL4 147 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 NPIPA7E9PJI5 369 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 HSD17B6O14756 317 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 BPNT1O95861 308 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 NPIPA8P0DM63 369 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 CPMP14384 443 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 TLX1P31314 330 aaPredicted RBP9.61□□□□□ -0.87
USP3-206ENST00000558157 RND2P52198 227 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 ODF4Q2M2E3 257 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 DEFB134Q4QY38 66 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 WDR74Q6RFH5 385 aaPredicted RBP9.61□□□□□ -0.87
USP3-206ENST00000558157 KIRREL2Q6UWL6 708 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 JAGN1Q8N5M9 183 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 OR51A2Q8NGJ7 313 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 IFI44Q8TCB0 444 aa9.61□□□□□ -0.87
USP3-206ENST00000558157 STT3BQ8TCJ2 826 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms