RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 RNLSQ5VYX0 342 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 DMKNQ6E0U4 476 aaPredicted RBP12.02□□□□□ -0.49
USP3-205ENST00000557884 GCSAMQ8N6F7 178 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 OR13C5Q8NGS8 318 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 PP6455Q8WZ26 134 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 GHSRQ92847 366 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 C10orf35Q96D05 121 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 SEH1LQ96EE3 360 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 TMEM246Q9BRR3 403 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 RASSF4Q9H2L5 321 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 BLOC1S6Q9UL45 172 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 ZNF281Q9Y2X9 895 aa12.02□□□□□ -0.49
USP3-205ENST00000557884 IGKV1-9A0A0C4DH69 117 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 OOEPA6NGQ2 149 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 LGALS8O00214 317 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 AKR7A2O43488 359 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 SYNGR1O43759 233 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 CD5LO43866 347 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 OCM2P0CE71 109 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 OCMP0CE72 109 aaPredicted RBP12.01□□□□□ -0.49
USP3-205ENST00000557884 ATF1P18846 271 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 CELP19835 753 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 HAAOP46952 286 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 TAS2R43P59537 309 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 MED22Q15528 200 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 ZNF404Q494X3 552 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 TMEM155Q4W5P6 130 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 PRSS48Q7RTY5 328 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 ANGPTL5Q86XS5 388 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 ZNF573Q86YE8 665 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 BATF2Q8N1L9 274 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 MUC20Q8N307 709 aaPredicted RBP12.01□□□□□ -0.49
USP3-205ENST00000557884 LINC01356Q8N9X3 169 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 OR13C9Q8NGT0 318 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 GPR148Q8TDV2 347 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 RAB39BQ96DA2 213 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 YAE1D1Q9NRH1 226 aa12.01□□□□□ -0.49
USP3-205ENST00000557884 LSM2Q9Y333 95 aaKnown RBP12.01□□□□□ -0.49
USP3-205ENST00000557884 CHD3Q12873 2000 aaKnown RBP12.01□□□□□ -0.49
USP3-205ENST00000557884 IGKV1-27A0A075B6S5 117 aa12□□□□□ -0.49
USP3-205ENST00000557884 J3QT63 122 aa12□□□□□ -0.49
USP3-205ENST00000557884 PLATP00750 562 aa12□□□□□ -0.49
USP3-205ENST00000557884 TGFAP01135 160 aa12□□□□□ -0.49
USP3-205ENST00000557884 LHBP01229 141 aa12□□□□□ -0.49
USP3-205ENST00000557884 GYPAP02724 150 aa12□□□□□ -0.49
USP3-205ENST00000557884 RPSAP08865 295 aaKnown RBP12□□□□□ -0.49
USP3-205ENST00000557884 RPS2P15880 293 aaKnown RBP12□□□□□ -0.49
USP3-205ENST00000557884 FUT6P51993 359 aa12□□□□□ -0.49
USP3-205ENST00000557884 SEC61A1P61619 476 aaKnown RBP12□□□□□ -0.49
USP3-205ENST00000557884 CNN3Q15417 329 aaKnown RBP12□□□□□ -0.49
USP3-205ENST00000557884 SPHARQ15513 63 aa12□□□□□ -0.49
USP3-205ENST00000557884 UTS2BQ765I0 119 aa12□□□□□ -0.49
USP3-205ENST00000557884 AQP3Q92482 292 aa12□□□□□ -0.49
USP3-205ENST00000557884 BORCS8Q96FH0 119 aa12□□□□□ -0.49
USP3-205ENST00000557884 PGLYRP3Q96LB9 341 aa12□□□□□ -0.49
USP3-205ENST00000557884 ZNF488Q96MN9 340 aa12□□□□□ -0.49
USP3-205ENST00000557884 WDR13Q9H1Z4 485 aa12□□□□□ -0.49
USP3-205ENST00000557884 ZCCHC4Q9H5U6 513 aa12□□□□□ -0.49
USP3-205ENST00000557884 PATZ1Q9HBE1 687 aaKnown RBP12□□□□□ -0.49
USP3-205ENST00000557884 SNTG1Q9NSN8 517 aa12□□□□□ -0.49
USP3-205ENST00000557884 MED13LQ71F56 2210 aa12□□□□□ -0.49
USP3-205ENST00000557884 ZFHX3Q15911 3703 aa12□□□□□ -0.49
USP3-205ENST00000557884 NF1P21359 2839 aa12□□□□□ -0.49
USP3-205ENST00000557884 NIPBLQ6KC79 2804 aaeCLIP12□□□□□ -0.49
USP3-205ENST00000557884 CR1P17927 2039 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 DYSFO75923 2080 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 TRAV38-1A0A0B4J264 116 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 SRRM5B3KS81 715 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.99□□□□□ -0.49
USP3-205ENST00000557884 INMTO95050 263 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 HSMCR30P0CW71 290 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 AZGP1P25311 298 aaKnown RBP11.99□□□□□ -0.49
USP3-205ENST00000557884 LYPD2Q6UXB3 125 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 FAM90A1Q86YD7 464 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 CALHM1Q8IU99 346 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 OR10Z1Q8NGY1 313 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 ZNF671Q8TAW3 534 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 RFT1Q96AA3 541 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 ORAI1Q96D31 301 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 C1orf159Q96HA4 380 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 TECTBQ96PL2 329 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 SPACA5Q96QH8 159 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 TAS2R4Q9NYW5 299 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 TANC2Q9HCD6 1990 aa11.99□□□□□ -0.49
USP3-205ENST00000557884 B4DSR2 109 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 F5H0A9 414 aaPredicted RBP11.98□□□□□ -0.49
USP3-205ENST00000557884 PLPP2O43688 288 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 FSTL3O95633 263 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 TFF1P04155 84 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 CD2P06729 351 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 PRKACBP22694 351 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 GLRA1P23415 457 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 CFHR2P36980 270 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 POU3F4P49335 361 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 RBP2P50120 134 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 MTCP1P56278 107 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 GABARAPL2P60520 117 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 RPS11P62280 158 aaKnown RBP eCLIP11.98□□□□□ -0.49
USP3-205ENST00000557884 LCN2P80188 198 aa11.98□□□□□ -0.49
USP3-205ENST00000557884 BDH1Q02338 343 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms