RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 PAK1IP1Q9NWT1 392 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-234ENST00000557703 UBAP1Q9NZ09 502 aa11.51□□□□□ -0.57
SHMT2-234ENST00000557703 ERVK-18Q9QC07 812 aa11.51□□□□□ -0.57
SHMT2-234ENST00000557703 PCDHB10Q9UN67 800 aa11.51□□□□□ -0.57
SHMT2-234ENST00000557703 LSM2Q9Y333 95 aaKnown RBP11.51□□□□□ -0.57
SHMT2-234ENST00000557703 CACNG2Q9Y698 323 aa11.51□□□□□ -0.57
SHMT2-234ENST00000557703 PPIAL4CA0A0B4J2A2 164 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 hCG_1807616A0A1W2PRN6 198 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 J3QT63 122 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 CDIPTO14735 213 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 MAGEB3O15480 346 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 CD5LO43866 347 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 GPX5O75715 221 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 OCM2P0CE71 109 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 OCMP0CE72 109 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-234ENST00000557703 ATF1P18846 271 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 CELP19835 753 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 GATA3P23771 443 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 THBS2P35442 1172 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 NPY4RP50391 375 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 LMO4P61968 165 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 IL24Q13007 206 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 MLLT11Q13015 90 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-234ENST00000557703 TPBGQ13641 420 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 UBE2V2Q15819 145 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 ZNF404Q494X3 552 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 KCTD21Q4G0X4 260 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 CEP78Q5JTW2 689 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 PRAMEF6Q5VXH4 476 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 DCDC5Q6ZRR9 648 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 NLRC3Q7RTR2 1065 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 CLDND2Q8NHS1 167 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 ZNF420Q8TAQ5 688 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-234ENST00000557703 TSEN15Q8WW01 171 aaKnown RBP11.5□□□□□ -0.57
SHMT2-234ENST00000557703 AQP3Q92482 292 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 PGLYRP3Q96LB9 341 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 PATZ1Q9HBE1 687 aaKnown RBP11.5□□□□□ -0.57
SHMT2-234ENST00000557703 TMEM165Q9HC07 324 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 TMEM160Q9NX00 188 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 KAAG1Q9UBP8 84 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 CKLFQ9UBR5 152 aa11.5□□□□□ -0.57
SHMT2-234ENST00000557703 POLR3KQ9Y2Y1 108 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-234ENST00000557703 TEP1Q99973 2627 aaKnown RBP11.5□□□□□ -0.57
SHMT2-234ENST00000557703 DOCK11Q5JSL3 2073 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 TRBV5-5A0A0J9YX44 114 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 ISPDA4D126 451 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 OOEPA6NGQ2 149 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 GPR37O15354 613 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 SULT1B1O43704 296 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 CYB5AP00167 134 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 LALBAP00709 142 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 IGHV2-5P01817 119 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 ALDOBP05062 364 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 RANBP1P43487 201 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 HAAOP46952 286 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 ZMYND11Q15326 602 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 MED22Q15528 200 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 ATPAF1Q5TC12 328 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-234ENST00000557703 XAF1Q6GPH4 301 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 ZNF529Q6P280 563 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 ZNF367Q7RTV3 350 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 CDH26Q8IXH8 852 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 MKXQ8IYA7 352 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 CIARTQ8N365 385 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-234ENST00000557703 GCSAMQ8N6F7 178 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 LINC01356Q8N9X3 169 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 OR51A4Q8NGJ6 313 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 UFD1Q92890 307 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 TMEM106AQ96A25 262 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 ADAT3Q96EY9 351 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-234ENST00000557703 DMRTB1Q96MA1 342 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 CCDC90BQ9GZT6 254 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 ZNF665Q9H7R5 613 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 SEBOXQ9HB31 216 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-234ENST00000557703 GPR173Q9NS66 373 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 LRCH1Q9Y2L9 728 aa11.49□□□□□ -0.57
SHMT2-234ENST00000557703 CR1P17927 2039 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 MALRD1Q5VYJ5 2156 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 FOXH1O75593 365 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 CYB5R3P00387 301 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-234ENST00000557703 FSTP19883 344 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 RAB3AP20336 220 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 MTCP1P56278 107 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 PPP3R1P63098 170 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 CLEC9AQ6UXN8 241 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 WDR86Q86TI4 376 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 SAXO1Q8IYX7 474 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 TEX29Q8N6K0 151 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 ZSCAN4Q8NAM6 433 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-234ENST00000557703 OR51F2Q8NH61 342 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 LRRC29Q8WV35 223 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 DVL3Q92997 716 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-234ENST00000557703 OPALINQ96PE5 141 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 TMEM138Q9NPI0 162 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 TREM2Q9NZC2 230 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 FOXJ3Q9UPW0 622 aa11.48□□□□□ -0.57
SHMT2-234ENST00000557703 SIRT4Q9Y6E7 314 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-234ENST00000557703 WNK2Q9Y3S1 2297 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 TRAV20A0A0B4J274 112 aa11.47□□□□□ -0.57
SHMT2-234ENST00000557703 MEGF11A6BM72 1044 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms