RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 SDHBP21912 280 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 NTF4P34130 210 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 ZNF93P35789 620 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-229ENST00000557348 ACTBP60709 375 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 ACTG1P63261 375 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 HFEQ30201 348 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 PAN3Q58A45 887 aaKnown RBP11.05□□□□□ -0.64
SHMT2-229ENST00000557348 IGFL3Q6UXB1 125 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 ZNF100Q8IYN0 542 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 OR51A2Q8NGJ7 313 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 OR10K1Q8NGX5 313 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 OR14K1Q8NGZ2 314 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 ZNF775Q96BV0 537 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-229ENST00000557348 NARS2Q96I59 477 aaKnown RBP11.05□□□□□ -0.64
SHMT2-229ENST00000557348 FAM71F1Q96KD3 344 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-229ENST00000557348 CHIAQ9BZP6 476 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 PRDM14Q9GZV8 571 aa11.05□□□□□ -0.64
SHMT2-229ENST00000557348 AQP7O14520 342 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 XRCC2O43543 280 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 FOLR2P14207 255 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 ARR3P36575 388 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 HTR5AP47898 357 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 NAAAQ02083 359 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 ZMYND11Q15326 602 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 RSPO4Q2I0M5 234 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-229ENST00000557348 DEFB109BQ30KR1 87 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 LINC00303Q3SY05 128 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 TUSC5Q8IXB3 177 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 DTX3Q8N9I9 347 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 KDF1Q8NAX2 398 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-229ENST00000557348 OR13C9Q8NGT0 318 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 NANOS1Q8WY41 292 aaKnown RBP11.04□□□□□ -0.64
SHMT2-229ENST00000557348 SARAFQ96BY9 339 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 ZNF837Q96EG3 531 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-229ENST00000557348 GMPPAQ96IJ6 420 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-229ENST00000557348 TECTBQ96PL2 329 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 CHST5Q9GZS9 411 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 DEFB127Q9H1M4 99 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 ATG5Q9H1Y0 275 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 SAV1Q9H4B6 383 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-229ENST00000557348 BARX1Q9HBU1 254 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-229ENST00000557348 SLC7A10Q9NS82 523 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 CA10Q9NS85 328 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 DMXL1Q9Y485 3027 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 BCL2L11O43521 198 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 S100A6P06703 90 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 CHRM2P08172 466 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 SLC2A1P11166 492 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 PRF1P14222 555 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 PRSS3P35030 304 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 KCNG3Q8TAE7 436 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 FAM46BQ96A09 425 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 SPSB1Q96BD6 273 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 AUNIPQ9H7T9 357 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 CALHM2Q9HA72 323 aa11.04□□□□□ -0.64
SHMT2-229ENST00000557348 CGGBP1Q9UFW8 167 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-229ENST00000557348 FXYD6-FXYD2A0A087WZ82 144 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 TMEM218A2RU14 115 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 CNOT4O95628 575 aaKnown RBP11.03□□□□□ -0.64
SHMT2-229ENST00000557348 HCKP08631 526 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 AKAIN1P0CW23 69 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 PVALBP20472 110 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-229ENST00000557348 CXADRP78310 365 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 PSG4Q00888 419 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 DEFA5Q01523 94 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 CNN3Q15417 329 aaKnown RBP11.03□□□□□ -0.64
SHMT2-229ENST00000557348 GFOD2Q3B7J2 385 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 NKAPLQ5M9Q1 402 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 AWAT2Q6E213 333 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 ZNF774Q6NX45 483 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 HAGHLQ6PII5 290 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-229ENST00000557348 C17orf107Q6ZR85 190 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 P4HA3Q7Z4N8 544 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 IZUMO1Q8IYV9 350 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 C12orf45Q8N5I9 185 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-229ENST00000557348 SEMA6DQ8NFY4 1073 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 OR52N4Q8NGI2 321 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 FXYD6Q9H0Q3 95 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 WNT5BQ9H1J7 359 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 OPA3Q9H6K4 179 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 CNTD2Q9H8S5 307 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 FLVCR2Q9UPI3 526 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 LIPGQ9Y5X9 500 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 CACNA1CQ13936 2221 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 NCKAP5O14513 1909 aa11.03□□□□□ -0.64
SHMT2-229ENST00000557348 PTPRBP23467 1997 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 TRAV18A0A075B6X5 111 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 RNF222A6NCQ9 220 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 DISC1C4P0D8 188 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 GATCO43716 136 aaKnown RBP11.02□□□□□ -0.64
SHMT2-229ENST00000557348 LMX1BO60663 402 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 SS18L1O75177 396 aaPredicted RBP11.02□□□□□ -0.64
SHMT2-229ENST00000557348 S100A9P06702 114 aaKnown RBP11.02□□□□□ -0.64
SHMT2-229ENST00000557348 MMP7P09237 267 aaPredicted RBP11.02□□□□□ -0.64
SHMT2-229ENST00000557348 FOSL1P15407 271 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 WT1P19544 449 aaPredicted RBP11.02□□□□□ -0.64
SHMT2-229ENST00000557348 ALDH3B1P43353 468 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 ARF1P84077 181 aaKnown RBP11.02□□□□□ -0.64
SHMT2-229ENST00000557348 ARL6IP1Q15041 203 aa11.02□□□□□ -0.64
SHMT2-229ENST00000557348 RSPO1Q2MKA7 263 aaPredicted RBP11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms