RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 A0A1W2PQD3 144 aa13.11□□□□□ -0.31
CUX1-215ENST00000556210 GJE1A6NN92 205 aa13.11□□□□□ -0.31
CUX1-215ENST00000556210 TMEM127O75204 238 aa13.11□□□□□ -0.31
CUX1-215ENST00000556210 ZNF32P17041 273 aa13.11□□□□□ -0.31
CUX1-215ENST00000556210 CAMLGP49069 296 aa13.11□□□□□ -0.31
CUX1-215ENST00000556210 ESRP2Q9H6T0 727 aaKnown RBP13.11□□□□□ -0.31
CUX1-215ENST00000556210 WNT16Q9UBV4 365 aa13.11□□□□□ -0.31
CUX1-215ENST00000556210 C9orf170A2RU37 121 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 C5orf49A4QMS7 147 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 TRIM77I1YAP6 450 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 TXNDC12O95881 172 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 PTGFRP43088 359 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 KCNJ3P48549 501 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 GRB2P62993 217 aaKnown RBP13.1□□□□□ -0.31
CUX1-215ENST00000556210 GNMTQ14749 295 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 PLPPR5Q32ZL2 321 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 SLC22A25Q6T423 547 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 ZNF519Q8TB69 540 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 MAGT1Q9H0U3 335 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 AUP1Q9Y679 476 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 HLA-HP01893 362 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 OR5H8P0DN80 308 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 S100GP29377 79 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 SHBQ15464 509 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 MICBQ29980 383 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 PLEKHN1Q494U1 663 aaPredicted RBP13.1□□□□□ -0.31
CUX1-215ENST00000556210 ADAM5Q6NVV9 412 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 ABHD3Q8WU67 409 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 GPHA2Q96T91 129 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 MED9Q9NWA0 146 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 KIF26AQ9ULI4 1882 aaPredicted RBP13.1□□□□□ -0.31
CUX1-215ENST00000556210 CADP27708 2225 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 IGKV3D-11A0A0A0MRZ8 115 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 EFSO43281 561 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 SCGNO76038 276 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 SNRPEP62304 92 aaKnown RBP13.1□□□□□ -0.31
CUX1-215ENST00000556210 B4GALT7Q9UBV7 327 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 MYO15AQ9UKN7 3530 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 KIAA2026Q5HYC2 2103 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 AKAP6Q13023 2319 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 HIST1H1DP16402 221 aaKnown RBP13.1□□□□□ -0.31
CUX1-215ENST00000556210 EFNA3P52797 238 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 WDR74Q6RFH5 385 aaPredicted RBP13.1□□□□□ -0.31
CUX1-215ENST00000556210 ZNF837Q96EG3 531 aaPredicted RBP13.1□□□□□ -0.31
CUX1-215ENST00000556210 USB1Q9BQ65 265 aaKnown RBP13.1□□□□□ -0.31
CUX1-215ENST00000556210 SMCO4Q9NRQ5 59 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 ST3GAL6Q9Y274 331 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 LHFPL6Q9Y693 200 aa13.1□□□□□ -0.31
CUX1-215ENST00000556210 TRBV5-7A0A0A0MS05 114 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 SULT1C2O00338 296 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 CDC14BO60729 498 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 CER1O95813 267 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 BPNT1O95861 308 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 RD3LP0DJH9 198 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 HOXC12P31275 282 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 SLC36A1Q7Z2H8 476 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 ZNF695Q8IW36 515 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 KCNK17Q96T54 332 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 HDGFL3Q9Y3E1 203 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 RAB27BO00194 218 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 NRASP01111 189 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 ZNF728P0DKX0 622 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 FCGR2CP31995 323 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 RBP2P50120 134 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 RAB32Q13637 225 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 OR2M3Q8NG83 312 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 LOXL2Q9Y4K0 774 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 MMP16P51512 607 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 TAS2R46P59540 309 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 UQCC3Q6UW78 93 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 SLC16A13Q7RTY0 426 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 OR51H1Q8NH63 302 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 NUBPLQ8TB37 319 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 CDX2Q99626 313 aaPredicted RBP13.09□□□□□ -0.31
CUX1-215ENST00000556210 RHOFQ9HBH0 211 aa13.09□□□□□ -0.31
CUX1-215ENST00000556210 ZNF318Q5VUA4 2279 aa13.08□□□□□ -0.31
CUX1-215ENST00000556210 DNASE2O00115 360 aaPredicted RBP13.08□□□□□ -0.32
CUX1-215ENST00000556210 S100A2P29034 98 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 MEOX2P50222 304 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 DHRS13Q6UX07 377 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 CPT1CQ8TCG5 803 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 TCTEX1D2Q8WW35 142 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 SPSB2Q99619 263 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 COL4A3Q01955 1670 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 VPS13AQ96RL7 3174 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 MED13LQ71F56 2210 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 BORCS7-ASMTA0A0B4J1R7 106 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 TRAV20A0A0B4J274 112 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 A0A0J9YW62 118 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 MPGP29372 298 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 GABRA4P48169 554 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 ARG2P78540 354 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 COL13A1Q5TAT6 717 aaPredicted RBP13.08□□□□□ -0.32
CUX1-215ENST00000556210 C1QL2Q7Z5L3 287 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 OR9K2Q8NGE7 335 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 ASB13Q8WXK3 278 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 TAF9BQ9HBM6 251 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 G6PC2Q9NQR9 355 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 CYB5R1Q9UHQ9 305 aa13.08□□□□□ -0.32
CUX1-215ENST00000556210 TNFSF18Q9UNG2 199 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms