RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 CELA2AP08217 269 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 CST2P09228 141 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 FAM157CP0CG43 387 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 HOXA6P31267 233 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 RAB32Q13637 225 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 GPR137CQ8N3F9 429 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 LRRC18Q8N456 261 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 ADAMTS17Q8TE56 1095 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 ROBO4Q8WZ75 1007 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 MR1Q95460 341 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 PIGTQ969N2 578 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 SGK3Q96BR1 496 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 ZNF701Q9NV72 531 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-222ENST00000555774 PLEKHJ1Q9NW61 149 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 ZNF391Q9UJN7 358 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 PILRBQ9UKJ0 227 aa11.8□□□□□ -0.52
SHMT2-222ENST00000555774 ARID1BQ8NFD5 2236 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-222ENST00000555774 MSGN1A6NI15 193 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 NUPL2O15504 423 aaKnown RBP11.79□□□□□ -0.52
SHMT2-222ENST00000555774 KCNAB3O43448 404 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 DTYMKP23919 212 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 PTGER4P35408 488 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 MLF1P58340 268 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 PMS2CLQ68D20 193 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 SGPP2Q8IWX5 399 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 TMED6Q8WW62 240 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 CNTNAP3BQ96NU0 1288 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 GNRHR2Q96P88 292 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 UCN2Q96RP3 112 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 ELL3Q9HB65 397 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-222ENST00000555774 HPF1Q9NWY4 346 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 LPAR3Q9UBY5 353 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 ZNF629Q9UEG4 869 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-222ENST00000555774 HS3ST3B1Q9Y662 390 aa11.79□□□□□ -0.52
SHMT2-222ENST00000555774 IGHV3-15A0A0B4J1V0 119 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 A0A0J9YW62 118 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 KLF7O75840 302 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-222ENST00000555774 RAC3P60763 192 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 SCRN3Q0VDG4 424 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 PJVKQ0ZLH3 352 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 RPS19BP1Q86WX3 136 aaKnown RBP11.78□□□□□ -0.52
SHMT2-222ENST00000555774 TMEM156Q8N614 296 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 AGBL5Q8NDL9 886 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 OR2Y1Q8NGV0 311 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 KCNE4Q8WWG9 221 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 FBXO17Q96EF6 278 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 PCDHB16Q9NRJ7 776 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 ANXA10Q9UJ72 324 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 SIT1Q9Y3P8 196 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 FAM74A7A6NL05 159 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 SGCEO43556 437 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 MTCP1P56278 107 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 KRTAP27-1Q3LI81 207 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 FAM74A3Q4VXF1 159 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 RPUSD3Q6P087 351 aaKnown RBP11.78□□□□□ -0.52
SHMT2-222ENST00000555774 ASCL4Q6XD76 172 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 LHFPL2Q6ZUX7 228 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 GALNTL5Q7Z4T8 443 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 MAFIPQ8WZ33 124 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 HLA-CQ95604 372 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 SMIM8Q96KF7 97 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 ZNF2Q9BSG1 426 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-222ENST00000555774 CNTNAP3Q9BZ76 1288 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 PRR13Q9NZ81 148 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 TUBD1Q9UJT1 453 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 MCTS1Q9ULC4 181 aaKnown RBP11.78□□□□□ -0.52
SHMT2-222ENST00000555774 A0A0C4DFX4 3053 aa11.78□□□□□ -0.52
SHMT2-222ENST00000555774 PMS2P1A4D2B8 440 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 CRYM-AS1A6NIL9 109 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 TNFSF11O14788 317 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 SYNGR3O43761 229 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 ACTL6AO96019 429 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 IFNA21P01568 189 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 IGHEP01854 428 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 HOXB5P09067 269 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 DBHP09172 617 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 H2AFB1P0C5Y9 115 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 TMEM225BP0DP42 221 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 GABRR1P24046 479 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 SRD5A2P31213 254 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 FLI1Q01543 452 aaPredicted RBP11.77□□□□□ -0.52
SHMT2-222ENST00000555774 RBM39Q14498 530 aaKnown RBP11.77□□□□□ -0.52
SHMT2-222ENST00000555774 SMCO1Q147U7 214 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 SNAI3Q3KNW1 292 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 ZNF528Q3MIS6 628 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 C6orf201Q7Z4U5 140 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 DTX1Q86Y01 620 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 FNDC9Q8TBE3 224 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 SGCZQ96LD1 299 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 GPR173Q9NS66 373 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 NDRG3Q9UGV2 375 aa11.77□□□□□ -0.52
SHMT2-222ENST00000555774 NSG1A0A0A6YYJ2 146 aa11.77□□□□□ -0.53
SHMT2-222ENST00000555774 ZNF705EA8MWA4 302 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-222ENST00000555774 NTN3O00634 580 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-222ENST00000555774 KNG1P01042 644 aa11.77□□□□□ -0.53
SHMT2-222ENST00000555774 GAPDHP04406 335 aaKnown RBP11.77□□□□□ -0.53
SHMT2-222ENST00000555774 HKR1P10072 659 aa11.77□□□□□ -0.53
SHMT2-222ENST00000555774 IL32P24001 234 aa11.77□□□□□ -0.53
SHMT2-222ENST00000555774 DUSP3P51452 185 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-222ENST00000555774 S100A10P60903 97 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms