RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 ANAPC10Q9UM13 185 aa8.43□□□□□ -1.06
SIX4-202ENST00000554079 SLC45A2Q9UMX9 530 aa8.43□□□□□ -1.06
SIX4-202ENST00000554079 RHBDD3Q9Y3P4 386 aa8.43□□□□□ -1.06
SIX4-202ENST00000554079 IER3IP1Q9Y5U9 82 aa8.43□□□□□ -1.06
SIX4-202ENST00000554079 RFNGQ9Y644 331 aa8.43□□□□□ -1.06
SIX4-202ENST00000554079 POLR2AP24928 1970 aaKnown RBP8.43□□□□□ -1.06
SIX4-202ENST00000554079 FIGNL2A6NMB9 653 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 LDB3O75112 727 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 HSD11B1P28845 292 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 ARR3P36575 388 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 COMPP49747 757 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 FAM3BP58499 235 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 FKBP1BP68106 108 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 KIF26BQ2KJY2 2108 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 GLYATL3Q5SZD4 288 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 CNKSR3Q6P9H4 555 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 Q7L0L9 218 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 SLC16A9Q7RTY1 509 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 NUP54Q7Z3B4 507 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 ZNF761Q86XN6 746 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 C17orf78Q8N4C9 275 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 DTWD2Q8NBA8 298 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 TSEN15Q8WW01 171 aaKnown RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 TMEM37Q8WXS4 190 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 THRSPQ92748 146 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 PTX4Q96A99 478 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 SCARF2Q96GP6 870 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 RASL10BQ96S79 203 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 LPAR4Q99677 370 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 CMKLR1Q99788 373 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 GABRG3Q99928 467 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 VAMP8Q9BV40 100 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 TMEM106BQ9NUM4 274 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 ZNF701Q9NV72 531 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 CGGBP1Q9UFW8 167 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 PADI3Q9ULW8 664 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 SMIM35A0A1B0GVV1 85 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 SYNDIG1LA6NDD5 238 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 E5RGE8 158 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 NPIPA2E9PIF3 369 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 NUPR1O60356 82 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 WDR1O75083 606 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 OR6A2O95222 327 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 C1orf105O95561 183 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 CTSAP10619 480 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 IGFBP3P17936 291 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 CTRLP40313 264 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 CNN1P51911 297 aaKnown RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 CLDN6P56747 220 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 UBE2NP61088 152 aaKnown RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 ZNF117Q03924 483 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 ZNF92Q03936 586 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 EIPR1Q53HC9 387 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 VAX1Q5SQQ9 334 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 DPY19L2P2Q6ZN68 376 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 TPRG1Q6ZUI0 275 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 Q6ZWC4 215 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 SPRED2Q7Z698 418 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 MYPOPQ86VE0 399 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 CSNK1A1LQ8N752 337 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 ABHD3Q8WU67 409 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 PTPMT1Q8WUK0 201 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 DNAJA3Q96EY1 480 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 SLC35A4Q96G79 324 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 FAM71F1Q96KD3 344 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 SGCZQ96LD1 299 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 NMNAT3Q96T66 252 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 KXD1Q9BQD3 176 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 OR6C3Q9NZP0 311 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 CXXC1Q9P0U4 656 aaPredicted RBP8.42□□□□□ -1.06
SIX4-202ENST00000554079 CKLFQ9UBR5 152 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 LAMTOR2Q9Y2Q5 125 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 NSG2Q9Y328 171 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 KIAA2026Q5HYC2 2103 aa8.42□□□□□ -1.06
SIX4-202ENST00000554079 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.41□□□□□ -1.06
SIX4-202ENST00000554079 ZNF320A2RRD8 509 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 FAM221AA4D161 298 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 OR2AG2A6NM03 316 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 C17orf105B2RV13 164 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 TSPAN6O43657 245 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 TRAPPC6AO75865 159 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 NGFRP08138 427 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 ATXN8OSP0DMR3 200 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 ZNF43P17038 809 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 PSMB5P28074 263 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 CCKBRP32239 447 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 CLDN18P56856 261 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 ERVS71-1P61550 626 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 RHOGP84095 191 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 MPV17LQ2QL34 196 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 WDR38Q5JTN6 314 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 Q5PR19 223 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 TMEM225Q6GV28 225 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 VWA1Q6PCB0 445 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 TMEM184AQ6ZMB5 413 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 C16orf82Q7Z2V1 217 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 CENPVQ7Z7K6 275 aaPredicted RBP8.41□□□□□ -1.06
SIX4-202ENST00000554079 RTN4RL2Q86UN3 420 aa8.41□□□□□ -1.06
SIX4-202ENST00000554079 LHFPL1Q86WI0 220 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms