RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 OR5AS1Q8N127 324 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 DNAAF1Q8NEP3 725 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 OR51A2Q8NGJ7 313 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 SLC25A40Q8TBP6 338 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 TRMT10AQ8TBZ6 339 aaKnown RBP12.36□□□□□ -0.43
SHMT2-208ENST00000553868 HAVCR1Q96D42 359 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 PIK3IP1Q96FE7 263 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 CMTM3Q96MX0 182 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 WDFY2Q96P53 400 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 HIST1H2AAQ96QV6 131 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 SLC30A2Q9BRI3 323 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 PAPOLGQ9BWT3 736 aaKnown RBP12.36□□□□□ -0.43
SHMT2-208ENST00000553868 OR2J1Q9GZK6 312 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 WDR12Q9GZL7 423 aaKnown RBP12.36□□□□□ -0.43
SHMT2-208ENST00000553868 SPATA2Q9UM82 520 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 NOP16Q9Y3C1 178 aaKnown RBP12.36□□□□□ -0.43
SHMT2-208ENST00000553868 MPC1Q9Y5U8 109 aa12.36□□□□□ -0.43
SHMT2-208ENST00000553868 CLDN25C9JDP6 229 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 CTDSP2O14595 271 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 AZGP1P25311 298 aaKnown RBP12.35□□□□□ -0.43
SHMT2-208ENST00000553868 HTR2CP28335 458 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 CALCRP30988 508 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 THBS2P35442 1172 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 SNTB2Q13425 540 aaKnown RBP12.35□□□□□ -0.43
SHMT2-208ENST00000553868 RIN1Q13671 783 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 ZNF846Q147U1 533 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 SPATA46Q5T0L3 261 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 PLCXD3Q63HM9 321 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 RGS7BPQ6MZT1 257 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-208ENST00000553868 LHFPL2Q6ZUX7 228 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 MOB3CQ70IA8 216 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 ZDHHC23Q8IYP9 409 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 OR52N4Q8NGI2 321 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 PIGCQ92535 297 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 CMBLQ96DG6 245 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 MARS2Q96GW9 593 aaKnown RBP12.35□□□□□ -0.43
SHMT2-208ENST00000553868 ZC3HAV1LQ96H79 300 aaKnown RBP12.35□□□□□ -0.43
SHMT2-208ENST00000553868 WFIKKN1Q96NZ8 548 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 HS3ST6Q96QI5 342 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 GPER1Q99527 375 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 REG4Q9BYZ8 158 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 POFUT1Q9H488 388 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 ESRP2Q9H6T0 727 aaKnown RBP12.35□□□□□ -0.43
SHMT2-208ENST00000553868 LIN7BQ9HAP6 207 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 GPR173Q9NS66 373 aa12.35□□□□□ -0.43
SHMT2-208ENST00000553868 MRPL15Q9P015 296 aaKnown RBP12.35□□□□□ -0.43
SHMT2-208ENST00000553868 VSTM5A8MXK1 200 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 IQCF6A8MYZ5 107 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 THBDP07204 575 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 UBBP0CG47 229 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 GLRXP35754 106 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 TALDO1P37837 337 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 FUT6P51993 359 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 ATP1B3P54709 279 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 ATP5J2P56134 94 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 SELENOVP59797 346 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 ZNF45Q02386 682 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 PRDX4Q13162 271 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 UBE2V2Q15819 145 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 MBNL2Q5VZF2 373 aaKnown RBP12.34□□□□□ -0.43
SHMT2-208ENST00000553868 LRRC28Q86X40 367 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-208ENST00000553868 SAMD12Q8N8I0 201 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 LGALS14Q8TCE9 139 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 KLF14Q8TD94 323 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-208ENST00000553868 UBASH3BQ8TF42 649 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 BORCS8Q96FH0 119 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 RADILQ96JH8 1075 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 SLC22A4Q9H015 551 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 GHRLQ9UBU3 117 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 CGGBP1Q9UFW8 167 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-208ENST00000553868 RHBDD3Q9Y3P4 386 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 DYSFO75923 2080 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 TENM1Q9UKZ4 2725 aa12.34□□□□□ -0.43
SHMT2-208ENST00000553868 IGKV1-9A0A0C4DH69 117 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 LOC100289279A0A1B0GTE1 492 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 ZNF850A8MQ14 1090 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 FAM25AB3EWG3 89 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 FAM25CB3EWG5 89 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 FAM25GB3EWG6 89 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 HPGDSO60760 199 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 APOA1P02647 267 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 SNRPBP14678 240 aaKnown RBP12.33□□□□□ -0.44
SHMT2-208ENST00000553868 KITLGP21583 273 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 TNFSF8P32971 234 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 RBP2P50120 134 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 MTCP1P56278 107 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 KISS1Q15726 138 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 FAM189A2Q15884 450 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 CLEC12BQ2HXU8 276 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 UBE2NLQ5JXB2 153 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 OR2T2Q6IF00 324 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 FAM166AQ6J272 317 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 C20orf204Q6ZNR8 217 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 LAX1Q8IWV1 398 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 NUP37Q8NFH4 326 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 IGFBPL1Q8WX77 278 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 FAM3DQ96BQ1 224 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 S100A13Q99584 98 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 AKIP1Q9NQ31 210 aa12.33□□□□□ -0.44
SHMT2-208ENST00000553868 RABL2AQ9UBK7 228 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms