RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 OR2A2Q6IF42 318 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 IDO2Q6ZQW0 420 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 RTN4RL2Q86UN3 420 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 MDP1Q86V88 176 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 GVQW1Q8N7I0 195 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 PXT1Q8NFP0 134 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 OR4S1Q8NGB4 309 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 OR5M9Q8NGP3 310 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 MS4A3Q96HJ5 214 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 ZNF75AQ96N20 296 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 OCSTAMPQ9BR26 566 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 IL36GQ9NZH8 169 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 IGHV1-2P23083 117 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 BLVRBP30043 206 aaPredicted RBP22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 PPA1Q15181 289 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 RSU1Q15404 277 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 ACSF3Q4G176 576 aaPredicted RBP22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 SEZ6L2Q6UXD5 910 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 GCNT2Q8N0V5 402 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 CSNK2A3Q8NEV1 391 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 OR56B2PQ8NGI1 322 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 OR6K3Q8NGY3 331 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 Q96M66 194 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 SLC6A7Q99884 636 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 PRRT1Q99946 306 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 STARD10Q9Y365 291 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 IGF2RP11717 2491 aa22.75■■□□□ 1.23
CCDC88C-205ENST00000553403 RAD51DO75771 328 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 CST4P01036 141 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 RLN1P04808 185 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 VSIG10L2P0DP72 767 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 CXCL3P19876 107 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 RPUSD3Q6P087 351 aaKnown RBP22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 Q6ZT83 130 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 C9orf106Q8NAJ2 232 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 PECRQ9BY49 303 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 MYOZ1Q9NP98 299 aaPredicted RBP22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 NPTNQ9Y639 398 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 SERPINE3A8MV23 424 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 CSTBP04080 98 aaKnown RBP22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 HOXB1P14653 301 aaPredicted RBP22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 ACTBL2Q562R1 376 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 SPICQ8N5J4 248 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 CAPSLQ8WWF8 208 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 ST8SIA4Q92187 359 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 PCDHB16Q9NRJ7 776 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 PTTG3PQ9NZH4 202 aa22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 EIF3KQ9UBQ5 218 aaKnown RBP22.74■■□□□ 1.23
CCDC88C-205ENST00000553403 MED12LQ86YW9 2145 aa22.73■■□□□ 1.23
CCDC88C-205ENST00000553403 ZNF850A8MQ14 1090 aa22.73■■□□□ 1.23
CCDC88C-205ENST00000553403 SPRY1O43609 319 aaPredicted RBP22.73■■□□□ 1.23
CCDC88C-205ENST00000553403 HTR3BO95264 441 aa22.73■■□□□ 1.23
CCDC88C-205ENST00000553403 KIR2DL2P43627 348 aaPredicted RBP22.73■■□□□ 1.23
CCDC88C-205ENST00000553403 PDZK1IP1Q13113 114 aa22.73■■□□□ 1.23
CCDC88C-205ENST00000553403 SF3B4Q15427 424 aaKnown RBP eCLIP22.73■■□□□ 1.23
CCDC88C-205ENST00000553403 CCDC107Q8WV48 283 aa22.73■■□□□ 1.23
CCDC88C-205ENST00000553403 BOD1Q96IK1 185 aa22.73■■□□□ 1.23
CCDC88C-205ENST00000553403 SSUH2Q9Y2M2 353 aa22.73■■□□□ 1.23
CCDC88C-205ENST00000553403 J3QW42 95 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 FABP7O15540 132 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 ZNHIT1O43257 154 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 ANGPTL7O43827 346 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 UBE2NP61088 152 aaKnown RBP22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 ARFRP1Q13795 201 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 NSUN5P2Q63ZY6 315 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 OR52W1Q6IF63 320 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 ZSCAN4Q8NAM6 433 aaPredicted RBP22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 SLC30A7Q8NEW0 376 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 OR5L1Q8NGL2 311 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 MRPS24Q96EL2 167 aaKnown RBP22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 HYLS1Q96M11 299 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 ZNF69Q9UC07 566 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 ASPMQ8IZT6 3477 aa22.72■■□□□ 1.23
CCDC88C-205ENST00000553403 UBE2QL1A1L167 161 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 AKR7A2O43488 359 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 NGFP01138 241 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 WNT5AP41221 380 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 FTMTQ8N4E7 242 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 RBMXL3Q8N7X1 1067 aaKnown RBP22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 OR13C8Q8NGS7 320 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 ZFAND1Q8TCF1 268 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 WBP1Q96G27 269 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 RANBP3Q9H6Z4 567 aaPredicted RBP22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 GPR160Q9UJ42 338 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 TMEM82A0PJX8 343 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 PDGFAP04085 211 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 HRH1P35367 487 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 CXADRP78310 365 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 PRDX4Q13162 271 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 CDK10Q15131 360 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 GABRA6Q16445 453 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 TBC1D28Q2M2D7 210 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 CNEP1R1Q8N9A8 125 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 OR4K15Q8NH41 348 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 SNAPC3Q92966 411 aa22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 PAPOLGQ9BWT3 736 aaKnown RBP22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 ZNF436Q9C0F3 470 aaPredicted RBP22.71■■□□□ 1.23
CCDC88C-205ENST00000553403 FAM172BPA6NC97 362 aa22.7■■□□□ 1.22
CCDC88C-205ENST00000553403 SMLR1H3BR10 107 aa22.7■■□□□ 1.22
CCDC88C-205ENST00000553403 ZNF14P17017 642 aaPredicted RBP22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms