RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 MTCP1P56278 107 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 HOXA4Q00056 320 aaPredicted RBP17.88■□□□□ 0.45
VPS29-206ENST00000549578 HSD17B12Q53GQ0 312 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 HAGHLQ6PII5 290 aaPredicted RBP17.88■□□□□ 0.45
VPS29-206ENST00000549578 ANGPTL5Q86XS5 388 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 DNAAF1Q8NEP3 725 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 RFT1Q96AA3 541 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 YIPF6Q96EC8 236 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 NKX3-1Q99801 234 aaPredicted RBP17.88■□□□□ 0.45
VPS29-206ENST00000549578 FOXC2Q99958 501 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 TLNRD1Q9H1K6 362 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 EXOSC4Q9NPD3 245 aaKnown RBP17.88■□□□□ 0.45
VPS29-206ENST00000549578 DLL4Q9NR61 685 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 TMEM106BQ9NUM4 274 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 ITGB1BP2Q9UKP3 347 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 STUB1Q9UNE7 303 aa17.88■□□□□ 0.45
VPS29-206ENST00000549578 MAP1AP78559 2803 aaPredicted RBP17.87■□□□□ 0.45
VPS29-206ENST00000549578 hCG_1807616A0A1W2PRN6 198 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 CYB5R3P00387 301 aaPredicted RBP17.87■□□□□ 0.45
VPS29-206ENST00000549578 RBP2P50120 134 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 LHFPL2Q6ZUX7 228 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 ZNF573Q86YE8 665 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 CALHM1Q8IU99 346 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 KRTAP1-3Q8IUG1 177 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 OR52N4Q8NGI2 321 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 OR13F1Q8NGS4 319 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 Q8TCH9 128 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 ERGIC1Q969X5 290 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 CHODLQ9H9P2 273 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 MYOZ1Q9NP98 299 aaPredicted RBP17.87■□□□□ 0.45
VPS29-206ENST00000549578 TMEM138Q9NPI0 162 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 FOXJ3Q9UPW0 622 aa17.87■□□□□ 0.45
VPS29-206ENST00000549578 PLATP00750 562 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 MAS1P04201 325 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 CALRP27797 417 aaKnown RBP17.86■□□□□ 0.45
VPS29-206ENST00000549578 BDKRB2P30411 391 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 ALDH3B2P48448 385 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 PDLIM4P50479 330 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 ATP1B3P54709 279 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 CLEC12BQ2HXU8 276 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 C22orf42Q6IC83 251 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 CLEC2AQ6UVW9 174 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 WDR82Q6UXN9 313 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 OR11L1Q8NGX0 322 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 PHYHIPQ92561 330 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 CHCHD6Q9BRQ6 235 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 METTL17Q9H7H0 456 aaPredicted RBP17.86■□□□□ 0.45
VPS29-206ENST00000549578 NEK6Q9HC98 313 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 TCF7L1Q9HCS4 588 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 SCOCQ9UIL1 159 aa17.86■□□□□ 0.45
VPS29-206ENST00000549578 VPS13CQ709C8 3753 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 MAGEB3O15480 346 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 RHBDL1O75783 438 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 ARL6IP5O75915 188 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 SRMP19623 302 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 GALP22466 123 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 DDI2Q5TDH0 399 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 CRIP3Q6Q6R5 217 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 DNM1P46Q6ZS02 220 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 SATL1Q86VE3 508 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 OR5D18Q8NGL1 313 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 AQP3Q92482 292 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 FAM168AQ92567 244 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 TXNL4BQ9NX01 149 aaKnown RBP17.85■□□□□ 0.45
VPS29-206ENST00000549578 SSR3Q9UNL2 185 aa17.85■□□□□ 0.45
VPS29-206ENST00000549578 PRRC2AP48634 2157 aaKnown RBP17.85■□□□□ 0.45
VPS29-206ENST00000549578 LOC100506127A0A0U1RQW1 187 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 LRRC30A6NM36 301 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 C3orf80F5H4A9 247 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 TMEM178BH3BS89 294 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 J3QT63 122 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 SYNGR1O43759 233 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 IRF2P14316 349 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 POU3F4P49335 361 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 KISS1Q15726 138 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 ZNF181Q2M3W8 571 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 FAM201AQ5SY85 155 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 BOLLQ8N9W6 283 aaKnown RBP17.84■□□□□ 0.45
VPS29-206ENST00000549578 LRRC29Q8WV35 223 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 HPS1Q92902 700 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 RNF7Q9UBF6 113 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 AKAP9Q99996 3911 aa17.84■□□□□ 0.45
VPS29-206ENST00000549578 CLDN25C9JDP6 229 aa17.83■□□□□ 0.45
VPS29-206ENST00000549578 PPIHO43447 177 aaKnown RBP17.83■□□□□ 0.45
VPS29-206ENST00000549578 ZNF205O95201 554 aa17.83■□□□□ 0.45
VPS29-206ENST00000549578 ALDOBP05062 364 aa17.83■□□□□ 0.45
VPS29-206ENST00000549578 CSF3P09919 207 aa17.83■□□□□ 0.45
VPS29-206ENST00000549578 ADRA2CP18825 462 aa17.83■□□□□ 0.45
VPS29-206ENST00000549578 FGF9P31371 208 aaPredicted RBP17.83■□□□□ 0.45
VPS29-206ENST00000549578 RIN1Q13671 783 aa17.83■□□□□ 0.45
VPS29-206ENST00000549578 LRRTM1Q86UE6 522 aa17.83■□□□□ 0.45
VPS29-206ENST00000549578 C10orf105Q8TEF2 133 aa17.83■□□□□ 0.45
VPS29-206ENST00000549578 FUNDC2Q9BWH2 189 aa17.83■□□□□ 0.45
VPS29-206ENST00000549578 MYO9AB2RTY4 2548 aa17.83■□□□□ 0.44
VPS29-206ENST00000549578 IGHV4-30-2A0A087WSY4 118 aa17.82■□□□□ 0.44
VPS29-206ENST00000549578 SHISA3A0PJX4 238 aa17.82■□□□□ 0.44
VPS29-206ENST00000549578 IFNL4K9M1U5 179 aa17.82■□□□□ 0.44
VPS29-206ENST00000549578 EGR1P18146 543 aa17.82■□□□□ 0.44
VPS29-206ENST00000549578 MPZP25189 248 aa17.82■□□□□ 0.44
VPS29-206ENST00000549578 GMFBP60983 142 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms