RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ABHD17AQ96GS6 310 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 C1orf147Q96MC9 270 aaPredicted RBP12.43□□□□□ -0.42
VPS33A-209ENST00000544349 C1QTNF6Q9BXI9 259 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 GSX2Q9BZM3 304 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 RAB22AQ9UL26 194 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 SPTBN2O15020 2390 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 POM121CA8CG34 1229 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 RRP8O43159 456 aaKnown RBP12.43□□□□□ -0.42
VPS33A-209ENST00000544349 SSX5O60225 188 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 RRASP10301 218 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 PPP3CBP16298 524 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 S100A11P31949 105 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 OR3A4PP47883 348 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 DHRS2Q13268 280 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 GUSBP1Q15486 140 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 ALKAL2Q6UX46 152 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 GCNT2Q8N0V5 402 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 C12orf45Q8N5I9 185 aaPredicted RBP12.43□□□□□ -0.42
VPS33A-209ENST00000544349 TMEM104Q8NE00 496 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 CCDC54Q8NEL0 328 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 STEAP2Q8NFT2 490 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 WNT2BQ93097 391 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 CXorf58Q96LI9 332 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 ALX4Q9H161 411 aaPredicted RBP12.43□□□□□ -0.42
VPS33A-209ENST00000544349 ATPIF1Q9UII2 106 aa12.43□□□□□ -0.42
VPS33A-209ENST00000544349 A0A1W2PP11 408 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 HMSDA8MTL9 139 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 CCSO14618 274 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 MTRF1O75570 445 aaKnown RBP12.42□□□□□ -0.42
VPS33A-209ENST00000544349 IL18BPO95998 194 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 HLA-HP01893 362 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 CRYABP02511 175 aaKnown RBP12.42□□□□□ -0.42
VPS33A-209ENST00000544349 LCATP04180 440 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 AP2S1P53680 142 aaPredicted RBP12.42□□□□□ -0.42
VPS33A-209ENST00000544349 TBR1Q16650 682 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 CDNFQ49AH0 187 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 RFPL4BQ6ZWI9 263 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 FAM214BQ7L5A3 538 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 SLC25A21Q9BQT8 299 aaPredicted RBP12.42□□□□□ -0.42
VPS33A-209ENST00000544349 ARL6Q9H0F7 186 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 NARFLQ9H6Q4 476 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 KCNN3Q9UGI6 736 aa12.42□□□□□ -0.42
VPS33A-209ENST00000544349 METTL21EPA6NDL7 271 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 ZNF503-AS2A6NEH8 195 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 TMEM14DPA8MWL7 114 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 ZNF93P35789 620 aaPredicted RBP12.41□□□□□ -0.42
VPS33A-209ENST00000544349 MPPED2Q15777 294 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 ACSF3Q4G176 576 aaPredicted RBP12.41□□□□□ -0.42
VPS33A-209ENST00000544349 TFAP2EQ6VUC0 442 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 C9orf106Q8NAJ2 232 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 OR1K1Q8NGR3 316 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 CCDC107Q8WV48 283 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 UQCC2Q9BRT2 126 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 FN3KRPQ9HA64 309 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 LUZP4Q9P127 313 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 SHOXO15266 292 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 RP2O75695 350 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 HLA-AP01891 365 aaKnown RBP12.41□□□□□ -0.42
VPS33A-209ENST00000544349 ERCC1P07992 297 aaPredicted RBP12.41□□□□□ -0.42
VPS33A-209ENST00000544349 COX5BP10606 129 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 HRH1P35367 487 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 ARR3P36575 388 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 RNASE10Q5GAN6 216 aaKnown RBP12.41□□□□□ -0.42
VPS33A-209ENST00000544349 ZNF585AQ6P3V2 769 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 ANGPTL5Q86XS5 388 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 OR2AE1Q8NHA4 323 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 BCL2L2Q92843 193 aaPredicted RBP12.41□□□□□ -0.42
VPS33A-209ENST00000544349 REEP6Q96HR9 211 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 DMRTA2Q96SC8 542 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 SELENOIQ9C0D9 397 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 CST11Q9H112 138 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 LPAR5Q9H1C0 372 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 ZNF107Q9UII5 783 aaPredicted RBP12.41□□□□□ -0.42
VPS33A-209ENST00000544349 TP53TG5Q9Y2B4 290 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 KCNK7Q9Y2U2 307 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 FRYQ5TBA9 3013 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 CFAP47Q6ZTR5 3102 aa12.41□□□□□ -0.42
VPS33A-209ENST00000544349 APC2O95996 2303 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 OR2AT4A6NND4 320 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 NMBP08949 121 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 CD79AP11912 226 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 THBS4P35443 961 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 RAB14P61106 215 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 RAB1AP62820 205 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 GTF3C1Q12789 2109 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 RAB12Q6IQ22 244 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 LIN54Q6MZP7 749 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 GLIPR1L1Q6UWM5 242 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 ZNF101Q8IZC7 436 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 OR5M8Q8NGP6 311 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 OR10R2Q8NGX6 335 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 EXTL1Q92935 676 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 MARVELD3Q96A59 401 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 C10orf35Q96D05 121 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 DOCK7Q96N67 2140 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 BANF2Q9H503 90 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 MYOZ1Q9NP98 299 aaPredicted RBP12.4□□□□□ -0.42
VPS33A-209ENST00000544349 PIGLQ9Y2B2 252 aa12.4□□□□□ -0.42
VPS33A-209ENST00000544349 MRPS28Q9Y2Q9 187 aaKnown RBP12.4□□□□□ -0.42
VPS33A-209ENST00000544349 IGKV1-9A0A0C4DH69 117 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms