RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RNF151Q2KHN1 245 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 LDLRAD2Q5SZI1 272 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 PLBD1Q6P4A8 553 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 SLC2A7Q6PXP3 512 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 CFAP77Q6ZQR2 320 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 KCTD8Q6ZWB6 473 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 TMPRSS11FQ6ZWK6 438 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 CBLL1Q75N03 491 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 TRMT10CQ7L0Y3 403 aaKnown RBP3.75□□□□□ -1.81
LIMS1-214ENST00000542845 TSEN54Q7Z6J9 526 aaKnown RBP3.75□□□□□ -1.81
LIMS1-214ENST00000542845 WDR86Q86TI4 376 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 SPARTQ8N0X7 666 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 LINC00471Q8N535 108 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 DPP10Q8N608 796 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 OR1M1Q8NGA1 313 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 OR13D1Q8NGV5 346 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 LRRC8CQ8TDW0 803 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 TMEM239Q8WW34 195 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 RPL3LQ92901 407 aaKnown RBP3.75□□□□□ -1.81
LIMS1-214ENST00000542845 Q96M85 177 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 ZIM3Q96PE6 472 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 COQ7Q99807 217 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 FAM110AQ9BQ89 295 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 HDHD2Q9H0R4 259 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 C1orf21Q9H246 121 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 DCLRE1BQ9H816 532 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 YY1AP1Q9H869 796 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 AIG1Q9NVV5 245 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 FAM53CQ9NYF3 392 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 USE1Q9NZ43 259 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 ADAM18Q9Y3Q7 739 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 TBL2Q9Y4P3 447 aaKnown RBP3.75□□□□□ -1.81
LIMS1-214ENST00000542845 LYVE1Q9Y5Y7 322 aa3.75□□□□□ -1.81
LIMS1-214ENST00000542845 TEX13CA0A0J9YWL9 993 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 PRSS29PA6NIE9 313 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 M0QX08 132 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 SLC22A2O15244 555 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 KHDRBS3O75525 346 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 TIPRLO75663 272 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 PGA5P0DJD9 388 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 IGHV4-30-4P0DP06 118 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 GP9P14770 177 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 BTF3P20290 206 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 TNFRSF1BP20333 461 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 GLRA1P23415 457 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 AZGP1P25311 298 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 BRS3P32247 399 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 SLC9A3P48764 834 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 ENTPD1P49961 510 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 RPL14P50914 215 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 POLR2JP52435 117 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 SLC7A2P52569 658 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 ABCE1P61221 599 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 SLC35B1P78383 322 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 TRAP1Q12931 704 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 FADDQ13158 208 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 ZNF273Q14593 569 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 KIAA1109Q2LD37 5005 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 RFX4Q33E94 735 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 SNAI3Q3KNW1 292 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 GLYATL3Q5SZD4 288 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 KCTD20Q7Z5Y7 419 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 OAFQ86UD1 273 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 CNPY4Q8N129 248 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 OR6V1Q8N148 313 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 C11orf42Q8N5U0 333 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 GPR32P1Q8NGA4 272 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 OR56B2PQ8NGI1 322 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 OR2AJ1Q8NGZ0 328 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 OR4Q3Q8NH05 313 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 OR8U1Q8NH10 309 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 OR5K1Q8NHB7 308 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 ANGPTL6Q8NI99 470 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 CHPT1Q8WUD6 406 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 UBLCP1Q8WVY7 318 aaPredicted RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 ST6GALNAC6Q969X2 333 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 C12orf43Q96C57 262 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 APOPT1Q96IL0 206 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 PKNOX2Q96KN3 472 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 ZNF570Q96NI8 536 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 TSSK2Q96PF2 358 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 RAB3IPQ96QF0 476 aaPredicted RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 ATF6BQ99941 703 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 ST6GALNAC5Q9BVH7 336 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 PAIP1Q9H074 479 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 NUAK2Q9H093 628 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 DNTTIP1Q9H147 329 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 SYT4Q9H2B2 425 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 WDR55Q9H6Y2 383 aaPredicted RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 EVA1AQ9H8M9 152 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 SP140LQ9H930 580 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 RETNQ9HD89 108 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 MRPS18AQ9NVS2 196 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 MRPL15Q9P015 296 aaKnown RBP3.74□□□□□ -1.81
LIMS1-214ENST00000542845 NLKQ9UBE8 527 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 RIMS3Q9UJD0 308 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 SH3GLB1Q9Y371 365 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 MED31Q9Y3C7 131 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 RAP2CQ9Y3L5 183 aa3.74□□□□□ -1.81
LIMS1-214ENST00000542845 LHFPL6Q9Y693 200 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms