RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 MYBPHQ13203 477 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 PHLDA2Q53GA4 152 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-237ENST00000539504 PBDC1Q9BVG4 233 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 TPSD1Q9BZJ3 242 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF160Q9HCG1 818 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 SLC2A4RGQ9NR83 387 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 ALKBH4Q9NXW9 302 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 IGKV1-9A0A0C4DH69 117 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 CEACAM18A8MTB9 384 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 GAPDHP04406 335 aaKnown RBP9.9□□□□□ -0.82
SYNE1-237ENST00000539504 QDPRP09417 244 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 EIF2S3P41091 472 aaKnown RBP9.9□□□□□ -0.82
SYNE1-237ENST00000539504 PIGPP57054 158 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 RAB2AP61019 212 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 FAM3AP98173 230 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 TSPO2Q5TGU0 170 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.9□□□□□ -0.82
SYNE1-237ENST00000539504 OR1L3Q8NH93 324 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 REEP6Q96HR9 211 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 MESP1Q9BRJ9 268 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 OR51M1Q9H341 326 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 C19orf12Q9NSK7 152 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 CD207Q9UJ71 328 aa9.9□□□□□ -0.82
SYNE1-237ENST00000539504 NXT1Q9UKK6 140 aaKnown RBP9.9□□□□□ -0.82
SYNE1-237ENST00000539504 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 DHRS7CA6NNS2 312 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 CLN5O75503 358 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 IFNA17P01571 189 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 OR5H8P0DN80 308 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF43P17038 809 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 AGAP20933 346 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 FASLGP48023 281 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 ACER2Q5QJU3 275 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 PLXDC2Q6UX71 529 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 TMEM182Q6ZP80 229 aaPredicted RBP9.9□□□□□ -0.83
SYNE1-237ENST00000539504 WDSUB1Q8N9V3 476 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 OR1J1Q8NGS3 322 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 AKR7LQ8NHP1 331 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 SLAMF9Q96A28 289 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 PLEKHA2Q9HB19 425 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 METTL1Q9UBP6 276 aaKnown RBP9.9□□□□□ -0.83
SYNE1-237ENST00000539504 UNC13CQ8NB66 2214 aa9.9□□□□□ -0.83
SYNE1-237ENST00000539504 AP4M1O00189 453 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 RRADP55042 308 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 IL15RAQ13261 267 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 RSPO4Q2I0M5 234 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-237ENST00000539504 SOHLH1Q5JUK2 328 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF529Q6P280 563 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 NOXO1Q8NFA2 376 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 BCL2L14Q9BZR8 327 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF700Q9H0M5 742 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 C5orf63A6NC05 138 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 E5RGE8 158 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 OR1D5P58170 312 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 HGFACQ04756 655 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 KIAA0141Q14154 515 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-237ENST00000539504 FBXW12Q6X9E4 464 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 LURAP1LQ8IV03 231 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 SUMF2Q8NBJ7 301 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 SPSB2Q99619 263 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 EGLN1Q9GZT9 426 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 SH3BGRL3Q9H299 93 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 METTL7AQ9H8H3 244 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 NSG2Q9Y328 171 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 MMP24Q9Y5R2 645 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 PHF3Q92576 2039 aaKnown RBP9.89□□□□□ -0.83
SYNE1-237ENST00000539504 FAM221AA4D161 298 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 SERPINE3A8MV23 424 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 OR2C1O95371 312 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 C14orf28Q4W4Y0 310 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 UBAC2Q8NBM4 344 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 OR5L1Q8NGL2 311 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 MCTS1Q9ULC4 181 aaKnown RBP9.89□□□□□ -0.83
SYNE1-237ENST00000539504 ANAPC10Q9UM13 185 aa9.89□□□□□ -0.83
SYNE1-237ENST00000539504 LILRA5A6NI73 299 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 FAM157AC9JC47 383 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 MBPP02686 304 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-237ENST00000539504 OR8U8P0C7N1 319 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 SLC35A1P78382 337 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 CLINT1Q14677 625 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 SURF2Q15527 256 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-237ENST00000539504 TAF9Q16594 264 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 FAM69BQ5VUD6 431 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 LYZL2Q7Z4W2 148 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 LRRC18Q8N456 261 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 MMP17Q9ULZ9 603 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 PIGLQ9Y2B2 252 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 STARD10Q9Y365 291 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 A0A1W2PPC4 97 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 ANGPTL7O43827 346 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 YIF1AO95070 293 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 OR5AC1P0C628 307 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF728P0DKX0 622 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 FOLR1P15328 257 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 ZNF17P17021 662 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 CHATP28329 748 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 C9orf152Q5JTZ5 239 aa9.88□□□□□ -0.83
SYNE1-237ENST00000539504 MEX3BQ6ZN04 569 aaKnown RBP9.88□□□□□ -0.83
SYNE1-237ENST00000539504 SLC38A9Q8NBW4 561 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms