RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 ANAPC10Q9UM13 185 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 ZNF407Q9C0G0 2248 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 FAM166BA8MTA8 275 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 MFNGO00587 321 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 EFSO43281 561 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 HPNP05981 417 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 SERPINA2P20848 420 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 FAM189A2Q15884 450 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 SKA3Q8IX90 412 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 EIF4E3Q8N5X7 224 aaKnown RBP11.66□□□□□ -0.54
VPS33B-202ENST00000535906 ADAD2Q8NCV1 583 aaKnown RBP11.66□□□□□ -0.54
VPS33B-202ENST00000535906 BVESQ8NE79 360 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 SEMA6DQ8NFY4 1073 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 REEP6Q96HR9 211 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 CDC6Q99741 560 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 TTTY12Q9BZ98 90 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 PPA2Q9H2U2 334 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 FN3KRPQ9HA64 309 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 TMEM9BQ9NQ34 198 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 GPR173Q9NS66 373 aa11.66□□□□□ -0.54
VPS33B-202ENST00000535906 DNAJC13O75165 2243 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 KANTRA0A1W2PQU2 76 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 DUS4LO95620 317 aaKnown RBP11.65□□□□□ -0.54
VPS33B-202ENST00000535906 LCATP04180 440 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 HTR5AP47898 357 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 ATP1B3P54709 279 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 CLDN18P56856 261 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 MICBQ29980 383 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 TUSC1Q2TAM9 212 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 KRTAP27-1Q3LI81 207 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 LRRC37A5PQ49AS3 106 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 TSPO2Q5TGU0 170 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 SLC16A14Q7RTX9 510 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 GALNTL5Q7Z4T8 443 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 HOGA1Q86XE5 327 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 FBXW5Q969U6 566 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 OR2H1Q9GZK4 316 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 WNT5BQ9H1J7 359 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 SLC6A15Q9H2J7 730 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 GHRLQ9UBU3 117 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 TIMM10BQ9Y5J6 103 aa11.65□□□□□ -0.54
VPS33B-202ENST00000535906 ASPMQ8IZT6 3477 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 FOXI3A8MTJ6 420 aaPredicted RBP11.65□□□□□ -0.55
VPS33B-202ENST00000535906 LINC01387J3KSC0 135 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 BCL2L11O43521 198 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 AKR1C4P17516 323 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 TAS2R31P59538 309 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 AIMP2Q13155 320 aaKnown RBP11.65□□□□□ -0.55
VPS33B-202ENST00000535906 PNLIPRP3Q17RR3 467 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 PDSS1Q5T2R2 415 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 ACOT7LQ6ZUV0 252 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 VRK1Q99986 396 aaPredicted RBP11.65□□□□□ -0.55
VPS33B-202ENST00000535906 COQ3Q9NZJ6 369 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 ABI3Q9P2A4 366 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 B4GALT7Q9UBV7 327 aa11.65□□□□□ -0.55
VPS33B-202ENST00000535906 NOSIPQ9Y314 301 aaKnown RBP11.65□□□□□ -0.55
VPS33B-202ENST00000535906 RNF222A6NCQ9 220 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 DBX1A6NMT0 343 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 HOXD4P09016 255 aaPredicted RBP11.64□□□□□ -0.55
VPS33B-202ENST00000535906 VAMP1P23763 118 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 ACTBL2Q562R1 376 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 VAX1Q5SQQ9 334 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.64□□□□□ -0.55
VPS33B-202ENST00000535906 CCDC54Q8NEL0 328 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 TERB2Q8NHR7 220 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 MARCH1Q8TCQ1 289 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 TMEM45BQ96B21 275 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 OCSTAMPQ9BR26 566 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 WDR13Q9H1Z4 485 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 ELL3Q9HB65 397 aaPredicted RBP11.64□□□□□ -0.55
VPS33B-202ENST00000535906 RASL12Q9NYN1 266 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 LOC400499M0QZD8 3231 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 CACNA1HO95180 2353 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 IGKV3D-15A0A087WSY6 115 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 A0A1B0GW55 424 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 FAM25EA8MYX2 175 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 MRPL33O75394 65 aaKnown RBP11.64□□□□□ -0.55
VPS33B-202ENST00000535906 DUX4L2P0CJ85 424 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 DUX4L3P0CJ86 424 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 DUX4L4P0CJ87 422 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 DUX4L5P0CJ88 424 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 DUX4L6P0CJ89 424 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 DUX4L7P0CJ90 424 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 BLVRBP30043 206 aaPredicted RBP11.64□□□□□ -0.55
VPS33B-202ENST00000535906 SPEM2Q0P670 501 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 ARRDC1Q8N5I2 433 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 TMEM251Q8N6I4 163 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 RELL2Q8NC24 303 aaPredicted RBP11.64□□□□□ -0.55
VPS33B-202ENST00000535906 PXT1Q8NFP0 134 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 CASTOR1Q8WTX7 329 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 S100A13Q99584 98 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 SHARPINQ9H0F6 387 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 DUX4Q9UBX2 424 aa11.64□□□□□ -0.55
VPS33B-202ENST00000535906 DHRS7CA6NNS2 312 aa11.63□□□□□ -0.55
VPS33B-202ENST00000535906 CEACAM18A8MTB9 384 aa11.63□□□□□ -0.55
VPS33B-202ENST00000535906 MMP7P09237 267 aaPredicted RBP11.63□□□□□ -0.55
VPS33B-202ENST00000535906 ZNF708P17019 499 aa11.63□□□□□ -0.55
VPS33B-202ENST00000535906 MTCP1P56278 107 aa11.63□□□□□ -0.55
VPS33B-202ENST00000535906 ARFRP1Q13795 201 aa11.63□□□□□ -0.55
VPS33B-202ENST00000535906 ATP1A1-AS1Q5TC04 95 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms