RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 PAGE2Q7Z2X7 111 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 BBS7Q8IWZ6 715 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 RNF10Q8N5U6 811 aaKnown RBP1.51□□□□□ -2.17
CD44-238ENST00000534296 SLC25A29Q8N8R3 303 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 ST20-AS1Q8NBB2 130 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 ZFAND1Q8TCF1 268 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 DOK4Q8TEW6 326 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 ORAOV1Q8WV07 137 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 MITD1Q8WV92 249 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 C17orf50Q8WW18 174 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 TMEM234Q8WY98 164 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 WDR34Q96EX3 536 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 SEC22CQ9BRL7 303 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 SAMD10Q9BYL1 202 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 TM6SF2Q9BZW4 377 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 GAL3ST2Q9H3Q3 398 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 TDRD3Q9H7E2 651 aaKnown RBP1.51□□□□□ -2.17
CD44-238ENST00000534296 KIR3DX1Q9H7L2 352 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 SDHAF3Q9NRP4 125 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 TMEM100Q9NV29 134 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 RBM22Q9NW64 420 aaKnown RBP eCLIP1.51□□□□□ -2.17
CD44-238ENST00000534296 RWDD2AQ9UIY3 292 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 SIGLEC7Q9Y286 467 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 SIGLEC9Q9Y336 463 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 ORC6Q9Y5N6 252 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 ZNF780BQ9Y6R6 833 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 AK9Q5TCS8 1911 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 SBNO1A3KN83 1393 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 TNIKQ9UKE5 1360 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 MROH5Q6ZUA9 1318 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 LOC102724200A0A096LPH7 203 aaPredicted RBP1.5□□□□□ -2.17
CD44-238ENST00000534296 A0A0A6YYD5 115 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 A0A0J9YYE9 177 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 GOLGA6L4A6NEF3 574 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 BOLA2-SMG1P6H3BVE0 249 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 CCDC22O60826 627 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 CXorf1O96002 111 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 OTCP00480 354 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 TRBV12-3P01733 135 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 TRBC1P01850 177 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 CRYGCP07315 174 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 OR5AL1P0C617 328 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 OR4Q2P0C623 313 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 SRMP19623 302 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 PTNP21246 168 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 CPN2P22792 545 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 CXCR1P25024 350 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 IVDP26440 423 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 TGFBR1P36897 503 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 HTR2BP41595 481 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 RANBP1P43487 201 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 RGS6P49758 472 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 GDI2P50395 445 aaKnown RBP1.5□□□□□ -2.17
CD44-238ENST00000534296 HCCSP53701 268 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 RPS11P62280 158 aaKnown RBP eCLIP1.5□□□□□ -2.17
CD44-238ENST00000534296 RPL10AP62906 217 aaKnown RBP1.5□□□□□ -2.17
CD44-238ENST00000534296 PMVKQ15126 192 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 CDNFQ49AH0 187 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 ATP6AP1LQ52LC2 224 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 TMEM236Q5W0B7 351 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 ZFAND6Q6FIF0 208 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 LRRC8AQ8IWT6 810 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 MIR7-3HGQ8N6C7 128 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 OR51L1Q8NGJ5 315 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 OR13C9Q8NGT0 318 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 OR1P1Q8NH06 330 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 NDNFQ8TB73 568 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 NT5CQ8TCD5 201 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 OR8D1Q8WZ84 308 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 YIPF5Q969M3 257 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 CENPNQ96H22 339 aaPredicted RBP1.5□□□□□ -2.17
CD44-238ENST00000534296 PDCD1LG2Q9BQ51 273 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 COPS4Q9BT78 406 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 COA1Q9GZY4 146 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 OR2S2Q9NQN1 319 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 RBFOX1Q9NWB1 397 aaKnown RBP1.5□□□□□ -2.17
CD44-238ENST00000534296 STX18Q9P2W9 335 aaKnown RBP1.5□□□□□ -2.17
CD44-238ENST00000534296 SLC7A11Q9UPY5 501 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 V9GYY9 64 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 DYSFO75923 2080 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 SCN1AP35498 2009 aa1.5□□□□□ -2.17
CD44-238ENST00000534296 YEATS2Q9ULM3 1422 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 IGKV1-27A0A075B6S5 117 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 IGKV3D-11A0A0A0MRZ8 115 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 IGHV2OR16-5A0A0B4J2B6 119 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 A0A0B4J2E0 115 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 FAM240AA0A1B0GVK7 77 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 LINC01619G3V211 115 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 RNF113AO15541 343 aaKnown RBP1.49□□□□□ -2.17
CD44-238ENST00000534296 NDUFS5O43920 106 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 CNMDO75829 334 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 OR2A4O95047 310 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 GIMD1P0DJR0 217 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 RNASE2P10153 161 aaKnown RBP1.49□□□□□ -2.17
CD44-238ENST00000534296 CD28P10747 220 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 SLC18A1P54219 525 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 RBX1P62877 108 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 BAMBIQ13145 260 aa1.49□□□□□ -2.17
CD44-238ENST00000534296 HNRNPA1L2Q32P51 320 aaKnown RBP1.49□□□□□ -2.17
CD44-238ENST00000534296 NKAIN1Q4KMZ8 207 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms