RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 NOP16Q9Y3C1 178 aaKnown RBP18.19■□□□□ 0.5
VPS28-212ENST00000530836 FAM230AA0A1W2PPH8 454 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 CRYAAP02489 173 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 PTH2RP49190 550 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 PRSS12P56730 875 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 TAS2R20P59543 309 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 TRIM16LQ309B1 348 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 CRIP3Q6Q6R5 217 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 OR5A2Q8NGI9 324 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 SLC25A40Q8TBP6 338 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 SMIM4Q8WVI0 70 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 FAM46BQ96A09 425 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 CMBLQ96DG6 245 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 ITPKCQ96DU7 683 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 OR2J1Q9GZK6 312 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 PCDHB16Q9NRJ7 776 aa18.18■□□□□ 0.5
VPS28-212ENST00000530836 GABARAPH6UMI1 98 aa18.17■□□□□ 0.5
VPS28-212ENST00000530836 ZNF780AO75290 641 aaPredicted RBP18.17■□□□□ 0.5
VPS28-212ENST00000530836 CHRM2P08172 466 aa18.17■□□□□ 0.5
VPS28-212ENST00000530836 ZNF83P51522 516 aa18.17■□□□□ 0.5
VPS28-212ENST00000530836 ZP1P60852 638 aa18.17■□□□□ 0.5
VPS28-212ENST00000530836 SORDQ00796 357 aa18.17■□□□□ 0.5
VPS28-212ENST00000530836 PLA2G7Q13093 441 aa18.17■□□□□ 0.5
VPS28-212ENST00000530836 ASAH1Q13510 395 aa18.17■□□□□ 0.5
VPS28-212ENST00000530836 OXA1LQ15070 435 aa18.17■□□□□ 0.5
VPS28-212ENST00000530836 DTX3Q8N9I9 347 aa18.17■□□□□ 0.5
VPS28-212ENST00000530836 C1orf147Q96MC9 270 aaPredicted RBP18.17■□□□□ 0.5
VPS28-212ENST00000530836 URM1Q9BTM9 101 aaKnown RBP18.17■□□□□ 0.5
VPS28-212ENST00000530836 KCNK15Q9H427 330 aa18.17■□□□□ 0.5
VPS28-212ENST00000530836 IQCF6A8MYZ5 107 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 M0R1B8 84 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 UNC119Q13432 240 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 DCDC5Q6ZRR9 648 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 ZSCAN4Q8NAM6 433 aaPredicted RBP18.16■□□□□ 0.5
VPS28-212ENST00000530836 PXT1Q8NFP0 134 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 FCAMRQ8WWV6 532 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 MARS2Q96GW9 593 aaKnown RBP18.16■□□□□ 0.5
VPS28-212ENST00000530836 SPOCK3Q9BQ16 436 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 METTL9Q9H1A3 318 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 GPR160Q9UJ42 338 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 ING4Q9UNL4 249 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 PTPN13Q12923 2485 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 PQLC2LA1A4F0 135 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 OR5B21A6NL26 309 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 CDC14BO60729 498 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 TMEM225BP0DP42 221 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 CCKARP32238 428 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 ZNF718Q3SXZ3 478 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 SPATA46Q5T0L3 261 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 OR2T2Q6IF00 324 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 ASCL4Q6XD76 172 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 RNF144BQ7Z419 303 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 DMRTC2Q8IXT2 367 aaPredicted RBP18.16■□□□□ 0.5
VPS28-212ENST00000530836 IZUMO1Q8IYV9 350 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 CENPSQ8N2Z9 138 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 KLF14Q8TD94 323 aaPredicted RBP18.16■□□□□ 0.5
VPS28-212ENST00000530836 TMEM59Q9BXS4 323 aa18.16■□□□□ 0.5
VPS28-212ENST00000530836 COL8A1P27658 744 aa18.15■□□□□ 0.5
VPS28-212ENST00000530836 DMRTC1Q5HYR2 192 aa18.15■□□□□ 0.5
VPS28-212ENST00000530836 MBNL2Q5VZF2 373 aaKnown RBP18.15■□□□□ 0.5
VPS28-212ENST00000530836 OR10K2Q6IF99 312 aa18.15■□□□□ 0.5
VPS28-212ENST00000530836 OR5D18Q8NGL1 313 aa18.15■□□□□ 0.5
VPS28-212ENST00000530836 YIPF5Q969M3 257 aa18.15■□□□□ 0.5
VPS28-212ENST00000530836 TRIM63Q969Q1 353 aa18.15■□□□□ 0.5
VPS28-212ENST00000530836 SLC22A4Q9H015 551 aa18.15■□□□□ 0.5
VPS28-212ENST00000530836 IL36GQ9NZH8 169 aa18.15■□□□□ 0.5
VPS28-212ENST00000530836 TBC1D24Q9ULP9 559 aa18.15■□□□□ 0.5
VPS28-212ENST00000530836 IGKV1-27A0A075B6S5 117 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 TRAV18A0A075B6X5 111 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 CRTAPO75718 401 aaPredicted RBP18.14■□□□□ 0.49
VPS28-212ENST00000530836 KDM4BO94953 1096 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 GCH1P30793 250 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 CALCRP30988 508 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 PDZK1IP1Q13113 114 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 SNTB1Q13884 538 aaKnown RBP18.14■□□□□ 0.49
VPS28-212ENST00000530836 SLC22A6Q4U2R8 563 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 SEZ6L2Q6UXD5 910 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 TMEM108Q6UXF1 575 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 MEX3BQ6ZN04 569 aaKnown RBP18.14■□□□□ 0.49
VPS28-212ENST00000530836 SAXO1Q8IYX7 474 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 OR5P3Q8WZ94 311 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 MRPS24Q96EL2 167 aaKnown RBP18.14■□□□□ 0.49
VPS28-212ENST00000530836 NGBQ9NPG2 151 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 NPAP1Q9NZP6 1156 aa18.14■□□□□ 0.49
VPS28-212ENST00000530836 MYEF2Q9P2K5 600 aaKnown RBP18.14■□□□□ 0.49
VPS28-212ENST00000530836 SULT1C2O00338 296 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 MPIG6BO95866 241 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 KITLGP21583 273 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 AP3S2P59780 193 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 RPS23P62266 143 aaKnown RBP18.13■□□□□ 0.49
VPS28-212ENST00000530836 PSG7Q13046 419 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 RSU1Q15404 277 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 Q6ZNX1 250 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 DNM1P46Q6ZS02 220 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 BIVMQ86UB2 503 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 BHLHE23Q8NDY6 225 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 OR56B1Q8NGI3 324 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 HPSE2Q8WWQ2 592 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 POM121Q96HA1 1249 aa18.13■□□□□ 0.49
VPS28-212ENST00000530836 HECTD1Q9ULT8 2610 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms