RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ADAM20O43506 726 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 B4GALT2O60909 372 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 MMP23AO75900 390 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 B3GAT3O94766 335 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 KBTBD11O94819 623 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ZFPL1O95159 310 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 AMY1AP04745 511 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ATP5G1P05496 136 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 PRSS1P07477 247 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 C1SP09871 688 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ACP5P13686 325 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SNRPBP14678 240 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 KIR2DL3P43628 341 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 GPR4P46093 362 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ATP5G3P48201 142 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ZXDAP98168 799 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ZXDBP98169 803 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ID2Q02363 134 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ATP5G2Q06055 141 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 HSD52Q0P140 79 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 PRDX4Q13162 271 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 UBE2V1Q13404 147 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SHBQ15464 509 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ZNF542PQ5EBM4 170 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 PSAPL1Q6NUJ1 521 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 PAQR3Q6TCH7 311 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 YRDCQ86U90 279 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 MOGAT3Q86VF5 341 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 MEX3DQ86XN8 651 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 FAM219AQ8IW50 185 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 CERS5Q8N5B7 392 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ZBTB34Q8NCN2 500 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 DMBX1Q8NFW5 382 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR5D13Q8NGL4 314 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 GTF3AQ92664 365 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 RPEQ96AT9 228 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 TMEM101Q96IK0 257 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SPATC1LQ9H0A9 340 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 SMOC1Q9H4F8 434 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 UBE2ZQ9H832 354 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 SLC5A6Q9Y289 635 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 GPR45Q9Y5Y3 372 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 HS3ST3A1Q9Y663 406 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 PGPEP1LA6NFU8 196 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 A8MWV9 139 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 PTGESO14684 152 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 DNAL4O96015 105 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 FAM157CP0CG43 387 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 EVI2AP22794 236 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 PCSK6P29122 969 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 C21orf33P30042 268 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 FCGR2BP31994 310 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 PMELP40967 661 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 NBL1P41271 181 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CSNK1DP48730 415 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 FLT3LGP49771 235 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CTXN1P60606 82 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CTAG1AP78358 180 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 KLF1Q13351 362 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 RUNX2Q13950 521 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 RNPS1Q15287 305 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 DCAF10Q5QP82 559 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CALHM3Q86XJ0 350 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CALHM1Q8IU99 346 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 PLPP6Q8IY26 295 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 RGL4Q8IZJ4 473 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CBARPQ8N350 705 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 NUP37Q8NFH4 326 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 OR1L8Q8NGR8 309 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 PLPPR1Q8TBJ4 325 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 MRPL30Q8TCC3 161 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 VN1R17PQ8TDU5 208 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 HBEGFQ99075 208 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 SPAG8Q99932 426 aaPredicted RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 SYT11Q9BT88 431 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 MRPL37Q9BZE1 423 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 TMEM140Q9NV12 185 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 MRPL16Q9NX20 251 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 ST3GAL6Q9Y274 331 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 BOLA1Q9Y3E2 137 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 RHBDD3Q9Y3P4 386 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 HEPACAM2A8MVW5 462 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 H3BQ15 152 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 J3KT08 172 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 FCN3O75636 299 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 MPC2O95563 127 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 IGHEP01854 428 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 OPN1SWP03999 348 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 MRPL3P09001 348 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 S100A4P26447 101 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 SLC19A1P41440 591 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 WNT3P56703 355 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 CLDN15P56746 228 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 UBE2NP61088 152 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 SNRPNP63162 240 aaKnown RBP3.22□□□□□ -1.89
USP53-205ENST00000509769 FOXK1P85037 733 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 OR1C1Q15619 314 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 ZNF766Q5HY98 468 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 ZNF506Q5JVG8 444 aa3.22□□□□□ -1.89
USP53-205ENST00000509769 SIRPB2Q5JXA9 342 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms