RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CHODLQ9H9P2 273 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 MYOZ1Q9NP98 299 aaPredicted RBP10.04□□□□□ -0.8
CUX1-210ENST00000497815 EXOSC4Q9NPD3 245 aaKnown RBP10.04□□□□□ -0.8
CUX1-210ENST00000497815 DLL4Q9NR61 685 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 TMEM106BQ9NUM4 274 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 PDZD2O15018 2839 aa10.04□□□□□ -0.8
CUX1-210ENST00000497815 IGKV1-27A0A075B6S5 117 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 IGHV4-30-2A0A087WSY4 118 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 CLDN25C9JDP6 229 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 C3orf80F5H4A9 247 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 MAGEB3O15480 346 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 FLNBO75369 2602 aaKnown RBP10.03□□□□□ -0.8
CUX1-210ENST00000497815 RHBDL1O75783 438 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 ZNF205O95201 554 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 PTBP3O95758 552 aaKnown RBP10.03□□□□□ -0.8
CUX1-210ENST00000497815 MAS1P04201 325 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 CSF3P09919 207 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 CD36P16671 472 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 JUNBP17275 347 aaPredicted RBP10.03□□□□□ -0.8
CUX1-210ENST00000497815 GADD45AP24522 165 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 POU3F4P49335 361 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 RBP2P50120 134 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 ATP1B3P54709 279 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 DSCR9P59020 149 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 MRPS11P82912 194 aaKnown RBP10.03□□□□□ -0.8
CUX1-210ENST00000497815 AKAP6Q13023 2319 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 FAM201AQ5SY85 155 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 WDR82Q6UXN9 313 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 ZNF573Q86YE8 665 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 CALHM1Q8IU99 346 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 KRTAP1-3Q8IUG1 177 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 C19orf18Q8NEA5 215 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 WFDC11Q8NEX6 87 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 OR52N4Q8NGI2 321 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 OR5D18Q8NGL1 313 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 C10orf105Q8TEF2 133 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 LRRC29Q8WV35 223 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 HPS1Q92902 700 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 ERGIC1Q969X5 290 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 SPSB1Q96BD6 273 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 PIMREGQ9BSJ6 248 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 OR51E2Q9H255 320 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 NARFLQ9H6Q4 476 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 NEK6Q9HC98 313 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 TCF7L1Q9HCS4 588 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 RNF7Q9UBF6 113 aa10.03□□□□□ -0.8
CUX1-210ENST00000497815 LOC100506127A0A0U1RQW1 187 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 ISPDA4D126 451 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 TRIM64BA6NI03 449 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 TMEM178BH3BS89 294 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 J3QT63 122 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 SYNGR1O43759 233 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 SC5DO75845 299 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 UCHL1P09936 223 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 IGFBP3P17936 291 aaPredicted RBP10.02□□□□□ -0.81
CUX1-210ENST00000497815 FSTP19883 344 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 CALRP27797 417 aaKnown RBP10.02□□□□□ -0.81
CUX1-210ENST00000497815 BDKRB2P30411 391 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 CD80P33681 288 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 GPR6P46095 362 aaPredicted RBP10.02□□□□□ -0.81
CUX1-210ENST00000497815 FAM76BQ5HYJ3 339 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 DDI2Q5TDH0 399 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 SHEQ5VZ18 495 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 C22orf42Q6IC83 251 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 ZNF529Q6P280 563 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 LHFPL2Q6ZUX7 228 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 PEG10Q86TG7 708 aaKnown RBP10.02□□□□□ -0.81
CUX1-210ENST00000497815 DNAAF1Q8NEP3 725 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 Q8TCH9 128 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 AQP3Q92482 292 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 TMIGD2Q96BF3 282 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 ZNF488Q96MN9 340 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 GPER1Q99527 375 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 CHCHD6Q9BRQ6 235 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 BPESC1Q9GZL8 116 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 TLNRD1Q9H1K6 362 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 TMEM138Q9NPI0 162 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 STUB1Q9UNE7 303 aa10.02□□□□□ -0.81
CUX1-210ENST00000497815 ANKRD17O75179 2603 aaKnown RBP10.02□□□□□ -0.81
CUX1-210ENST00000497815 ITPR2Q14571 2701 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 USF3Q68DE3 2245 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 SPG11Q96JI7 2443 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 TRDV1A0A1B0GX56 115 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 IFNL4K9M1U5 179 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 AKR7A2O43488 359 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 SPRY1O43609 319 aaPredicted RBP10.01□□□□□ -0.81
CUX1-210ENST00000497815 GPX5O75715 221 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 ARL6IP5O75915 188 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 EGR1P18146 543 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 SRMP19623 302 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 TMEM33P57088 247 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 RIN1Q13671 783 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 KISS1Q15726 138 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 ZNF181Q2M3W8 571 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 SFRP4Q6FHJ7 346 aaPredicted RBP10.01□□□□□ -0.81
CUX1-210ENST00000497815 CD200R1LQ6Q8B3 271 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 PRSS57Q6UWY2 283 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 DNM1P46Q6ZS02 220 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 SLC25A26Q70HW3 274 aa10.01□□□□□ -0.81
CUX1-210ENST00000497815 C1orf87Q8N0U7 546 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms